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Sample GSM1360938 Query DataSets for GSM1360938
Status Public on Mar 23, 2015
Title MEF+KOSM_33d_1
Sample type RNA
 
Source name iPSC intermediate
Organism Mus musculus
Characteristics vector infection: Day 33
shield1 addition: none
Extracted molecule total RNA
Extraction protocol Total RNA was purified by ReliaPrep RNA Cell Miniprep System (Promega).
Label Biotin
Label protocol cRNA was prepared by reverse-transcription and labeling using Illumina TotalPrep RNA Amplification Kit (Life Technologies).
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data was normalized using GenomeStudio Gene Expression Module v1.0 and the report was created using GEO Data Submission Report Plug-in v2.0.0
 
Submission date Apr 01, 2014
Last update date Mar 23, 2015
Contact name Ken Nishimura
E-mail(s) ken-nishimura@md.tsukuba.ac.jp
Organization name University of Tsukuba
Street address 1-1-1 Tennodai
City Tsukuba, Ibaraki
ZIP/Postal code 305-8575
Country Japan
 
Platform ID GPL6885
Series (1)
GSE56406 Global gene expression analyses of paused iPSCs

Data table header descriptions
ID_REF
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 9084.057 0
ILMN_2721178 2854.372 0.01629073
ILMN_3033922 1171.412 0.05263158
ILMN_3092673 6029.788 0.001253133
ILMN_2816356 101.1456 0.2055138
ILMN_2808939 296.8283 0.1466165
ILMN_2634564 -71.45886 0.3308271
ILMN_2737647 -502.7083 0.9385965
ILMN_2734484 -389.0112 0.7994987
ILMN_2952292 -281.1741 0.6177945
ILMN_2699078 -403.5835 0.8195488
ILMN_1213681 1272.01 0.04636591
ILMN_2735413 87.74078 0.2117794
ILMN_2735415 -216.5256 0.537594
ILMN_2891688 -34.38171 0.2957394
ILMN_2637698 689.5612 0.09649123
ILMN_2674228 926.4662 0.0726817
ILMN_2601546 -9.422535 0.2819549
ILMN_1230831 -336.5211 0.7155389
ILMN_2848071 127.4401 0.197995

Total number of rows: 25697

Table truncated, full table size 810 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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