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Sample GSM1360945 Query DataSets for GSM1360945
Status Public on Mar 23, 2015
Title MEF+fKOSM(Sh30)_22d_2
Sample type RNA
 
Source name paused iPSC
Organism Mus musculus
Characteristics vector infection: Day 22
shield1 addition: 30 nM
Extracted molecule total RNA
Extraction protocol Total RNA was purified by ReliaPrep RNA Cell Miniprep System (Promega).
Label Biotin
Label protocol cRNA was prepared by reverse-transcription and labeling using Illumina TotalPrep RNA Amplification Kit (Life Technologies).
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing The data was normalized using GenomeStudio Gene Expression Module v1.0 and the report was created using GEO Data Submission Report Plug-in v2.0.0
 
Submission date Apr 01, 2014
Last update date Mar 23, 2015
Contact name Ken Nishimura
E-mail(s) ken-nishimura@md.tsukuba.ac.jp
Organization name University of Tsukuba
Street address 1-1-1 Tennodai
City Tsukuba, Ibaraki
ZIP/Postal code 305-8575
Country Japan
 
Platform ID GPL6885
Series (1)
GSE56406 Global gene expression analyses of paused iPSCs

Data table header descriptions
ID_REF
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 9116.212 0
ILMN_2721178 2572.128 0
ILMN_3033922 1472.309 0.003759399
ILMN_3092673 9806.148 0
ILMN_2816356 30.36893 0.2092732
ILMN_2808939 1655.114 0
ILMN_2634564 226.7942 0.0764411
ILMN_2737647 -59.69697 0.5350877
ILMN_2734484 10.71097 0.2368421
ILMN_2952292 -20.12556 0.3408521
ILMN_2699078 -117.034 0.8784461
ILMN_1213681 614.2286 0.02255639
ILMN_2735413 39.06637 0.1879699
ILMN_2735415 1.747954 0.2556391
ILMN_2891688 340.2625 0.04511278
ILMN_2637698 820.975 0.01378446
ILMN_2674228 1370.115 0.005012531
ILMN_2601546 19.75123 0.2180451
ILMN_1230831 -72.56676 0.6090226
ILMN_2848071 149.3307 0.1077694

Total number of rows: 25697

Table truncated, full table size 798 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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