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|
| Status |
Public on Nov 16, 2007 |
| Title |
Liver fenofibrate feeding mouse pparalpha-/- |
| Sample type |
RNA |
| |
|
| Source name |
liver, 7 days 0.2% fenofibrate feeding
|
| Organism |
Mus musculus |
| Characteristics |
liver, 8 week old male 129SvEJ pparalpha -/- mice (pool of 3)
|
| Extracted molecule |
total RNA |
| Label |
standard affymetrix protocol
|
| |
|
| Description |
Comments: standard format array hybridization with amplification New 20x Euk ctl lot#3004405 exp 111004 DMSO lot # 103K2311
Algorithm: Statistical
Corner+ Avg:115, Count:32
Corner- Avg:10337, Count:32
Background Avg:57.41,Stdev:1.91,Max:62.8,Min:54.7
Noise Avg:3.36,Stdev:0.21,Max:4.0,Min:3.0
RawQ 1.81
BF
Alpha1 0.05
Alpha2 0.065
Tau 0.015
Gamma1H 0.002
Gamma1L 0.002
Gamma2H 0.002667
Gamma2L 0.002667
Perturbation 1.1
TGT 1000
NF 1
SF 22.8590126
SFGene All
|
| Data processing |
standard Affymetrix protocols
|
| |
|
| Submission date |
Sep 13, 2006 |
| Last update date |
Aug 28, 2018 |
| Contact name |
David L Silver |
| E-mail(s) |
dsilver@aecom.yu.edu
|
| Organization name |
Albert Einstein College of Medicine
|
| Department |
Biochemistry
|
| Lab |
Ullmann 909
|
| Street address |
1300 Morris Park Ave.
|
| City |
Bronx |
| State/province |
NY |
| ZIP/Postal code |
10461 |
| Country |
USA |
| |
|
| Platform ID |
GPL1261 |
| Series (1) |
| GSE5826 |
Liver fenofibrate feeding mouse |
|
| Relations |
| Reanalyzed by |
GSE119085 |
| Data table header descriptions |
| ID_REF |
|
| VALUE |
signal |
| ABS_CALL |
detection, absent or present |
| DETECTION P-VALUE |
p-value |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
2655 |
P |
0.000258 |
| AFFX-BioB-M_at |
6518.9 |
P |
0.00007 |
| AFFX-BioB-3_at |
3090.4 |
P |
0.000044 |
| AFFX-BioC-5_at |
7615.8 |
P |
0.00006 |
| AFFX-BioC-3_at |
8206.8 |
P |
0.000044 |
| AFFX-BioDn-5_at |
8395.8 |
P |
0.000044 |
| AFFX-BioDn-3_at |
44692.8 |
P |
0.000044 |
| AFFX-CreX-5_at |
107359.1 |
P |
0.000044 |
| AFFX-CreX-3_at |
141856.7 |
P |
0.000044 |
| AFFX-DapX-5_at |
139.1 |
A |
0.165861 |
| AFFX-DapX-M_at |
197.2 |
A |
0.340661 |
| AFFX-DapX-3_at |
13.5 |
A |
0.986189 |
| AFFX-LysX-5_at |
227.1 |
A |
0.078002 |
| AFFX-LysX-M_at |
23.7 |
A |
0.783476 |
| AFFX-LysX-3_at |
33.3 |
A |
0.382599 |
| AFFX-PheX-5_at |
7.3 |
A |
0.99238 |
| AFFX-PheX-M_at |
13.9 |
A |
0.960339 |
| AFFX-PheX-3_at |
422.4 |
P |
0.021902 |
| AFFX-ThrX-5_at |
26.5 |
A |
0.852061 |
| AFFX-ThrX-M_at |
10.7 |
A |
0.897835 |
Total number of rows: 45101
Table truncated, full table size 1230 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM136100.CEL.gz |
5.7 Mb |
(ftp)(http) |
CEL |
| Processed data included within Sample table |
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