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Sample GSM136196 Query DataSets for GSM136196
Status Public on Sep 16, 2006
Title Human activated Th2 Cells
Sample type SAGE
Anchor NlaIII
Tag Count 32288
Tag Length 10
 
Source name Cord blood-derived Th2 cells
Organism Homo sapiens
Characteristics healthy donor
Extracted molecule total RNA
 
Description Human neonatal leukocytes were isolated from freshly collected, heparinized, neonatal cord blood by a density gradient centrifugation using Lymphoprep. Th2-polarized cells were generated by stimulating cord blood leukocytes with 200 U/ml IL-4 and 2 ug/ml neutralizing anti-IL-12 antibody for Th2 cultures. Cells were washed on day 3 and expanded in each medium containing 4 ng/ml IL-2. At day 12 to 14, leukocytes were incubated with anti-CD4 monoclonal antibody coated magnetic beads, and CD4+ cells were isolated by passing the cultured cells through a magnetic cell separation system.
Cord blood-derived Th2 cells were collected after 3 days of CD4 positive cell separation, washed, and restumulated with 50 ng/ml of PMA and 1 ug/ml of ionomycin for 4 h.
 
Submission date Sep 15, 2006
Last update date Nov 19, 2008
Contact name Shinichi Hashimoto
E-mail(s) hashimot@m.u-tokyo.ac.jp
Phone +81-3-5841-3434
Fax +81-3-5841-3393
Organization name The University of Tokyo
Department Graduate School of Medicine
Street address 7-3-1 Hongo, Bunkyo-ku
City Tokyo
ZIP/Postal code 113-0033
Country Japan
 
Platform ID GPL4
Series (1)
GSE5833 Human Leukocytes SAGE

Data table header descriptions
TAG Ten base SAGE tag
COUNT Absolute tag count
TPM tags per million

Data table
TAG COUNT TPM
GTGAAACCCC 350 10839.94
TGTGTTGAGA 301 9322.35
CCTGTAATCC 283 8764.87
TTGGTCCTCT 219 6782.71
GTTGTGGTTA 199 6163.28
CAAGCATCCC 177 5481.91
CCACTGCACT 175 5419.97
GCCGTGTCCG 171 5296.09
TAGGTTGTCT 167 5172.20
CCCGTCCGGA 160 4955.40
GCCGAGGAAG 159 4924.43
TGCACGTTTT 151 4676.66
GTGAAACCCT 143 4428.89
TGTGAATATG 123 3809.46
CACAAACGGT 122 3778.49
CCAGAACAGA 120 3716.55
GCAGAAGAAT 119 3685.58
ATAATTCTTT 117 3623.64
AAAACATTCT 114 3530.72
TGGTGTTGAG 101 3128.10

Total number of rows: 13870

Table truncated, full table size 258 Kbytes.




Supplementary data files not provided

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