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Sample GSM1364048 Query DataSets for GSM1364048
Status Public on Apr 08, 2014
Title P0 Quadriceps Klhl40 KO 1
Sample type RNA
 
Source name KO 1 Quadriceps
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: Klhl40 knock out
age: 0 days
tissue: muscle
muscle type: Quadriceps
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent in accordance with the prescribed protocol. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Cy3-labeled cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 07, 2014
Last update date Apr 08, 2014
Contact name Ankit Garg
E-mail(s) ankitgarg2025@gmail.com
Organization name UT Southwestern Medical Center
Department Molecular Biology
Lab Eric N. Olson
Street address 6000 Harry Hines Blvd, NA 8.500
City Dallas
State/province TX
ZIP/Postal code 75235
Country USA
 
Platform ID GPL6887
Series (1)
GSE56570 Comparison of genes regulated in P0 Klhl40 WT and KO skeletal muscle

Data table header descriptions
ID_REF
VALUE quantile normalized signal
KO1.Avg_NBEADS
KO1.BEAD_STDERR
KO1.Detection Pval

Data table
ID_REF VALUE KO1.Avg_NBEADS KO1.BEAD_STDERR KO1.Detection Pval
ILMN_2735294 154.342 56 4.966266 0
ILMN_2417611 100.0569 44 2.614711 0.8803419
ILMN_2545897 154.2722 43 3.632889 0
ILMN_2762289 112.7143 51 2.084519 0.1228632
ILMN_1248788 108.0334 37 2.500028 0.2991453
ILMN_2707227 111.227 33 3.036079 0.1549145
ILMN_2896528 3096.49 31 145.4826 0
ILMN_2721178 894.3118 29 32.64354 0
ILMN_1227723 351.2504 40 8.6269 0
ILMN_2458837 103.6876 49 2.115908 0.6111111
ILMN_3033922 1540.442 52 45.95975 0
ILMN_3092673 5761.785 49 158.3912 0
ILMN_1230777 3264.825 49 116.999 0
ILMN_2730714 2495.584 41 79.37168 0
ILMN_1246069 4016.837 38 218.5185 0
ILMN_1232042 101.6669 54 1.823354 0.7852564
ILMN_1243193 643.1093 51 23.80944 0
ILMN_2524361 103.0146 53 2.462334 0.667735
ILMN_1233188 176.3952 57 4.281699 0
ILMN_2543688 662.3745 52 17.60165 0

Total number of rows: 45281

Table truncated, full table size 1844 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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