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Sample GSM1372356 Query DataSets for GSM1372356
Status Public on Nov 01, 2014
Title Veh wt 9771
Sample type RNA
 
Source name Veh wt 9771
Organism Mus musculus
Characteristics strain: B6C3F1/J
genotype/variation: wt
treatment: Veh
tissue: gastrocnemius skeletal muscle
Extracted molecule total RNA
Extraction protocol RNA from gastrocnemius skeletal muscle was extracted using RNAeasy mini kit (Qiagen) with DNase I treatment to eliminate genomic DNA contamination
Label biotin
Label protocol Standard Illumina biotin-labeling protocol
 
Hybridization protocol Samples were hybridized onto the Illumina Sentrix BeadChip Array MouseRef-8 v2 for 18 hours at 58°C (protocol available at http://www.illumina.com/products/mouseref-8_expression_beadchip_kits_v2.ilmn).
Scan protocol Standard Illumina scanning protocol
Description Veh_wt_9771
Data processing The data were normalized using quantile normalization with IlluminaGUI in R
 
Submission date Apr 22, 2014
Last update date Nov 01, 2014
Contact name Giovanni Coppola
E-mail(s) gcoppola@ucla.edu
Phone 310-794-4172
Organization name UCLA
Department Psychiatry and Neurology
Lab Neurogenetics
Street address 1524 Gonda, 695 Charles Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE56963 The effect of HDAC inhibitor, 4b, on skeletal muscle gene expression

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection p-value

Data table
ID_REF VALUE Detection p-value
ILMN_1248788 7.196660773 0.0689223
ILMN_2707227 7.131860139 0.09649123
ILMN_2896528 13.44996332 0
ILMN_2721178 11.50713662 0
ILMN_1227723 8.799488906 0
ILMN_3033922 11.04614434 0
ILMN_3092673 12.88370002 0
ILMN_2730714 12.80795827 0
ILMN_3162224 12.76412697 0
ILMN_2816356 7.783418915 0.001253133
ILMN_2808939 7.866923147 0
ILMN_2634564 9.73591018 0
ILMN_1216623 9.766667545 0
ILMN_1215157 10.47464428 0
ILMN_1228777 6.748452265 0.7619048
ILMN_2737647 7.169169065 0.0764411
ILMN_1216425 6.651989674 0.9749373
ILMN_2734484 9.801846147 0
ILMN_2652961 6.74428273 0.7731829
ILMN_2952292 7.555740684 0.002506266

Total number of rows: 25697

Table truncated, full table size 817 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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