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Sample GSM1372363 Query DataSets for GSM1372363
Status Public on Nov 01, 2014
Title 4B Tg/+ 9753
Sample type RNA
 
Source name 4B Tg/+ 9753
Organism Mus musculus
Characteristics strain: B6C3F1/J
genotype/variation: Tg
treatment: 4B
tissue: gastrocnemius skeletal muscle
Extracted molecule total RNA
Extraction protocol RNA from gastrocnemius skeletal muscle was extracted using RNAeasy mini kit (Qiagen) with DNase I treatment to eliminate genomic DNA contamination
Label biotin
Label protocol Standard Illumina biotin-labeling protocol
 
Hybridization protocol Samples were hybridized onto the Illumina Sentrix BeadChip Array MouseRef-8 v2 for 18 hours at 58°C (protocol available at http://www.illumina.com/products/mouseref-8_expression_beadchip_kits_v2.ilmn).
Scan protocol Standard Illumina scanning protocol
Description 4B_Tg_9753
Data processing The data were normalized using quantile normalization with IlluminaGUI in R
 
Submission date Apr 22, 2014
Last update date Nov 01, 2014
Contact name Giovanni Coppola
E-mail(s) gcoppola@ucla.edu
Phone 310-794-4172
Organization name UCLA
Department Psychiatry and Neurology
Lab Neurogenetics
Street address 1524 Gonda, 695 Charles Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE56963 The effect of HDAC inhibitor, 4b, on skeletal muscle gene expression

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection p-value

Data table
ID_REF VALUE Detection p-value
ILMN_1248788 6.783191917 0.6754386
ILMN_2707227 7.015479357 0.1641604
ILMN_2896528 13.04754625 0
ILMN_2721178 10.94083064 0
ILMN_1227723 10.19371138 0
ILMN_3033922 11.05538082 0
ILMN_3092673 12.86165625 0
ILMN_2730714 12.71469872 0
ILMN_3162224 11.40848679 0
ILMN_2816356 7.575561867 0.001253133
ILMN_2808939 8.025448886 0
ILMN_2634564 9.664038392 0
ILMN_1216623 9.749639822 0
ILMN_1215157 10.44871093 0
ILMN_1228777 6.687301739 0.9323308
ILMN_2737647 7.116221561 0.0839599
ILMN_1216425 6.739983546 0.802005
ILMN_2734484 9.453773151 0
ILMN_2652961 6.703813999 0.9010025
ILMN_2952292 7.116313379 0.0839599

Total number of rows: 25697

Table truncated, full table size 808 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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