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Sample GSM1372365 Query DataSets for GSM1372365
Status Public on Nov 01, 2014
Title Veh wt 9757
Sample type RNA
Source name Veh wt 9757
Organism Mus musculus
Characteristics strain: B6C3F1/J
genotype/variation: wt
treatment: Veh
tissue: gastrocnemius skeletal muscle
Extracted molecule total RNA
Extraction protocol RNA from gastrocnemius skeletal muscle was extracted using RNAeasy mini kit (Qiagen) with DNase I treatment to eliminate genomic DNA contamination
Label biotin
Label protocol Standard Illumina biotin-labeling protocol
Hybridization protocol Samples were hybridized onto the Illumina Sentrix BeadChip Array MouseRef-8 v2 for 18 hours at 58°C (protocol available at
Scan protocol Standard Illumina scanning protocol
Description Veh_wt_9757
Data processing The data were normalized using quantile normalization with IlluminaGUI in R
Submission date Apr 22, 2014
Last update date Nov 01, 2014
Contact name Giovanni Coppola
Phone 310-794-4172
Organization name UCLA
Department Psychiatry and Neurology
Lab Neurogenetics
Street address 1524 Gonda, 695 Charles Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
Platform ID GPL6885
Series (1)
GSE56963 The effect of HDAC inhibitor, 4b, on skeletal muscle gene expression

Data table header descriptions
VALUE quantile normalized signal
Detection p-value

Data table
ID_REF VALUE Detection p-value
ILMN_1248788 7.057373669 0.1065163
ILMN_2707227 7.264603936 0.01503759
ILMN_2896528 13.22098899 0
ILMN_2721178 11.21506165 0
ILMN_1227723 9.077281409 0
ILMN_3033922 10.5591247 0
ILMN_3092673 12.85543363 0
ILMN_2730714 12.80131124 0
ILMN_3162224 12.2857265 0
ILMN_2816356 7.380803061 0.001253133
ILMN_2808939 8.233020091 0
ILMN_2634564 9.665971738 0
ILMN_1216623 9.551378406 0
ILMN_1215157 10.36104543 0
ILMN_1228777 6.805738395 0.5877193
ILMN_2737647 6.999213083 0.1741855
ILMN_1216425 6.679425212 0.933584
ILMN_2734484 9.700208069 0
ILMN_2652961 6.624368468 0.981203
ILMN_2952292 7.486539391 0.001253133

Total number of rows: 25697

Table truncated, full table size 810 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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