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Sample GSM1372368 Query DataSets for GSM1372368
Status Public on Nov 01, 2014
Title 4B wt 9769
Sample type RNA
Source name 4B wt 9769
Organism Mus musculus
Characteristics strain: B6C3F1/J
genotype/variation: wt
treatment: 4B
tissue: gastrocnemius skeletal muscle
Extracted molecule total RNA
Extraction protocol RNA from gastrocnemius skeletal muscle was extracted using RNAeasy mini kit (Qiagen) with DNase I treatment to eliminate genomic DNA contamination
Label biotin
Label protocol Standard Illumina biotin-labeling protocol
Hybridization protocol Samples were hybridized onto the Illumina Sentrix BeadChip Array MouseRef-8 v2 for 18 hours at 58°C (protocol available at
Scan protocol Standard Illumina scanning protocol
Description 4B_wt_9769
Data processing The data were normalized using quantile normalization with IlluminaGUI in R
Submission date Apr 22, 2014
Last update date Nov 01, 2014
Contact name Giovanni Coppola
Phone 310-794-4172
Organization name UCLA
Department Psychiatry and Neurology
Lab Neurogenetics
Street address 1524 Gonda, 695 Charles Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
Platform ID GPL6885
Series (1)
GSE56963 The effect of HDAC inhibitor, 4b, on skeletal muscle gene expression

Data table header descriptions
VALUE quantile normalized signal
Detection p-value

Data table
ID_REF VALUE Detection p-value
ILMN_1248788 6.998470766 0.1829574
ILMN_2707227 7.169755929 0.04135338
ILMN_2896528 13.0444669 0
ILMN_2721178 11.0803564 0
ILMN_1227723 8.669693856 0
ILMN_3033922 10.62699009 0
ILMN_3092673 12.82118212 0
ILMN_2730714 12.72590759 0
ILMN_3162224 12.43497481 0
ILMN_2816356 7.643154617 0
ILMN_2808939 8.443579466 0
ILMN_2634564 9.560923887 0
ILMN_1216623 9.944901451 0
ILMN_1215157 10.46124918 0
ILMN_1228777 6.831739288 0.4899749
ILMN_2737647 7.051725114 0.122807
ILMN_1216425 6.705866127 0.8721805
ILMN_2734484 9.960304664 0
ILMN_2652961 6.732615435 0.7944862
ILMN_2952292 7.487209914 0.002506266

Total number of rows: 25697

Table truncated, full table size 811 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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