|
| Status |
Public on May 01, 2014 |
| Title |
WT primary OBLs, biological rep 1 |
| Sample type |
RNA |
| |
|
| Source name |
WT primary OBLs
|
| Organism |
Mus musculus |
| Characteristics |
genotype/variation: wild type
tissue origin: neonatal mouse calvaria bone
tissue: Myoblast
cell type: primary osteoblasts (OBLs)
|
| Treatment protocol |
Comparison of OBLs extracted from Runx3fl/fl/Col1a1-cre and WT
|
| Growth protocol |
OBL progenitor cells were isolated from neonatal mouse calvaria bone, according to standard protocol. Cells were then allowed to differentiate to OBLs in an osteogenic medium (containing ascorbate and glycerol phosphate) for 21 days (at 37°C/5% CO2). Medium was refreshed 3 times/week.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isolated by PerfectPure RNA tissue kit (# 2302410, 5 PRIME, Germany) according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
200ng TotalRNA were used for labeling. cDNA samples were generated and labeled using Affymetrix WT-cDNA synthesis and labeling kit
|
| |
|
| Hybridization protocol |
2ug ss cDNA in 80 ul total volume were hybridized to a Mouse Gene 1.0 ST array using Affymetrix hybridization kit materials and hybridized for 17 hours at 45° at 60rpm. Post-hyb washes were done with Affymetrix wash solutions on the FS450 station using FS450_0007 protocol.
|
| Scan protocol |
Arrays were scanned on the Affymetrix GeneChip Scanner 3000 7G
|
| Description |
SAMPLE 2
|
| Data processing |
Data analysis was done using the Partek Genome Suite software (Partek Inc., St. Louis, Missouri 63141, http://www.partek.com), using RMA.
|
| |
|
| Submission date |
Apr 30, 2014 |
| Last update date |
May 01, 2014 |
| Contact name |
Omri Bauer |
| E-mail(s) |
Omri.Bauer@weizmann.ac.il
|
| Phone |
972-8-9342318
|
| Organization name |
Weizmann Institute of Science
|
| Department |
Molecular Genetics
|
| Lab |
Prof. Yoram Groner
|
| Street address |
Herzl
|
| City |
Rehovot |
| ZIP/Postal code |
76100 |
| Country |
Israel |
| |
|
| Platform ID |
GPL16570 |
| Series (1) |
| GSE57195 |
Loss of Runx3 in osteoblasts provokes severe congenital osteopenia |
|
