NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1379514 Query DataSets for GSM1379514
Status Public on May 07, 2014
Title male pupae replicate 2 [miRNA]
Sample type RNA
 
Source name male Drosophila pupae
Organism Drosophila melanogaster
Characteristics Sex: male
developmental stage: pupae
Treatment protocol Flies laid in staggered vials and larvae, pupae and adults samples collected at the same time from vials at the right stage of development. 10 individuals included in each biological replicate collected.
Growth protocol LHm outbred population kept at 25oC
Extracted molecule total RNA
Extraction protocol ambion miRvana total RNA extraction kit used according to manufacturer's protocol
Label biotin
Label protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
Scan protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
Description gene expression data from LHm outbred population
Data processing RMA standard
 
Submission date May 06, 2014
Last update date May 07, 2014
Contact name Fiona C Ingleby
Organization name University of Sussex
Department School of Biology
Street address John Maynard Smith Building
City Falmer
ZIP/Postal code BN1 9QG
Country United Kingdom
 
Platform ID GPL16384
Series (2)
GSE57321 Sex-specific mRNA and miRNA expression data from Drosophila larvae, pupae and adults [miRNA]
GSE57322 Sex-specific mRNA and miRNA expression data from Drosophila larvae, pupae and adults

Data table header descriptions
ID_REF
VALUE As provided by affy package, R 3.0.2, Bioconductor 2.2

Data table
ID_REF VALUE
dme-bantam-3p_st 5.816977882
dme-bantam-5p_st 2.125063133
dme-let-7-5p_st 12.87923569
dme-miR-10-3p_st 9.84283849
dme-miR-10-5p_st 6.371319344
dme-miR-100-3p_st 6.172685745
dme-miR-100-5p_st 9.908261378
dme-miR-1000-3p_st 4.511340223
dme-miR-1000-5p_st 6.173078487
dme-miR-1001-5p_st 1.393264224
dme-miR-1002-5p_st 1.121204074
dme-miR-1003-5p_st 3.426219335
dme-miR-1004-3p_st 3.709117366
dme-miR-1007-3p_st 1.539598161
dme-miR-1010-3p_st 6.520899428
dme-miR-1015-3p_st 1.702159104
dme-miR-1017-3p_st 7.064095422
dme-miR-11-5p_st 4.384054929
dme-miR-12-5p_st 7.665311981
dme-miR-124-3p_st 10.31140299

Total number of rows: 213

Table truncated, full table size 6 Kbytes.




Supplementary file Size Download File type/resource
GSM1379514_PM2.MI.CEL.gz 794.2 Kb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap