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Sample GSM1379515 Query DataSets for GSM1379515
Status Public on May 07, 2014
Title female adults replicate 1 [miRNA]
Sample type RNA
 
Source name female Drosophila adults
Organism Drosophila melanogaster
Characteristics Sex: female
developmental stage: adults
Treatment protocol Flies laid in staggered vials and larvae, pupae and adults samples collected at the same time from vials at the right stage of development. 10 individuals included in each biological replicate collected.
Growth protocol LHm outbred population kept at 25oC
Extracted molecule total RNA
Extraction protocol ambion miRvana total RNA extraction kit used according to manufacturer's protocol
Label biotin
Label protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
Scan protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
Description gene expression data from LHm outbred population
Data processing RMA standard
 
Submission date May 06, 2014
Last update date May 07, 2014
Contact name Fiona C Ingleby
Organization name University of Sussex
Department School of Biology
Street address John Maynard Smith Building
City Falmer
ZIP/Postal code BN1 9QG
Country United Kingdom
 
Platform ID GPL16384
Series (2)
GSE57321 Sex-specific mRNA and miRNA expression data from Drosophila larvae, pupae and adults [miRNA]
GSE57322 Sex-specific mRNA and miRNA expression data from Drosophila larvae, pupae and adults

Data table header descriptions
ID_REF
VALUE As provided by affy package, R 3.0.2, Bioconductor 2.2

Data table
ID_REF VALUE
dme-bantam-3p_st 6.054838931
dme-bantam-5p_st 1.826254098
dme-let-7-5p_st 11.03608914
dme-miR-10-3p_st 10.42412268
dme-miR-10-5p_st 6.884393583
dme-miR-100-3p_st 3.489164348
dme-miR-100-5p_st 7.47962565
dme-miR-1000-3p_st 2.037808365
dme-miR-1000-5p_st 4.181670334
dme-miR-1001-5p_st 1.441771804
dme-miR-1002-5p_st 7.253440274
dme-miR-1003-5p_st 1.432747821
dme-miR-1004-3p_st 2.063722807
dme-miR-1007-3p_st 1.132174996
dme-miR-1010-3p_st 4.421526034
dme-miR-1015-3p_st 7.28172214
dme-miR-1017-3p_st 6.04799796
dme-miR-11-5p_st 3.267960726
dme-miR-12-5p_st 8.839481721
dme-miR-124-3p_st 9.149646655

Total number of rows: 213

Table truncated, full table size 6 Kbytes.




Supplementary file Size Download File type/resource
GSM1379515_AF1.MI.CEL.gz 788.6 Kb (ftp)(http) CEL
Processed data included within Sample table

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