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Sample GSM1379517 Query DataSets for GSM1379517
Status Public on May 07, 2014
Title male adults replicate 1 [miRNA]
Sample type RNA
 
Source name male Drosophila adults
Organism Drosophila melanogaster
Characteristics Sex: male
developmental stage: adults
Treatment protocol Flies laid in staggered vials and larvae, pupae and adults samples collected at the same time from vials at the right stage of development. 10 individuals included in each biological replicate collected.
Growth protocol LHm outbred population kept at 25oC
Extracted molecule total RNA
Extraction protocol ambion miRvana total RNA extraction kit used according to manufacturer's protocol
Label biotin
Label protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
Scan protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
Description gene expression data from LHm outbred population
Data processing RMA standard
 
Submission date May 06, 2014
Last update date May 07, 2014
Contact name Fiona C Ingleby
Organization name University of Sussex
Department School of Biology
Street address John Maynard Smith Building
City Falmer
ZIP/Postal code BN1 9QG
Country United Kingdom
 
Platform ID GPL16384
Series (2)
GSE57321 Sex-specific mRNA and miRNA expression data from Drosophila larvae, pupae and adults [miRNA]
GSE57322 Sex-specific mRNA and miRNA expression data from Drosophila larvae, pupae and adults

Data table header descriptions
ID_REF
VALUE As provided by affy package, R 3.0.2, Bioconductor 2.2

Data table
ID_REF VALUE
dme-bantam-3p_st 6.149847104
dme-bantam-5p_st 1.345388557
dme-let-7-5p_st 11.52250221
dme-miR-10-3p_st 10.76646396
dme-miR-10-5p_st 7.42062509
dme-miR-100-3p_st 5.484159101
dme-miR-100-5p_st 8.489471475
dme-miR-1000-3p_st 3.783354968
dme-miR-1000-5p_st 5.70679451
dme-miR-1001-5p_st 2.863246209
dme-miR-1002-5p_st 1.055488445
dme-miR-1003-5p_st 2.183932816
dme-miR-1004-3p_st 5.034274602
dme-miR-1007-3p_st 1.137966322
dme-miR-1010-3p_st 4.003114757
dme-miR-1015-3p_st 7.817841347
dme-miR-1017-3p_st 7.695660968
dme-miR-11-5p_st 4.143459526
dme-miR-12-5p_st 9.450822872
dme-miR-124-3p_st 9.953695195

Total number of rows: 213

Table truncated, full table size 6 Kbytes.




Supplementary file Size Download File type/resource
GSM1379517_AM1.MI.CEL.gz 822.3 Kb (ftp)(http) CEL
Processed data included within Sample table

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