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GEO accession:
Sample GSM139123
Query DataSets for GSM139123
Status
Public on Apr 09, 2007
Title
Ovarian_Tumor_1027T
Sample type
RNA
Source name
Ovarian_Tumor
Organism
Mus musculus
Characteristics
Strain: C57BL6/J (with Apc loxP/loxP and Pten loxP/loxP)
Gender: Female
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label
biotin
Label protocol
3-5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Tissue: Ovary tumor
Data processing
Ann Arbor quantile-normalized trimmed-mean method
Submission date
Oct 06, 2006
Last update date
Aug 28, 2018
Contact name
Rork Kuick
E-mail(s)
rork@umich.edu
Phone
734-936-9241
Organization name
University of Michigan
Street address
University of Michigan, SPH II, 1415 Washington Heights, Room M2533
City
Ann Arbor
State/province
MI
ZIP/Postal code
48109-2029
Country
USA
Platform ID
GPL1261
Series (1)
GSE5987
Mouse model of Endometrioid Ovarian Adenocarcinomas by conditional inactivation of PTEN and APC genes
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
quantile-normalized trimmed-mean, log-transformed with log(max(x+50,0)+50) using base 10 logarithms
Data table
ID_REF
VALUE
1415670_at
3.626340367
1415671_at
3.640083731
1415672_at
3.917295401
1415673_at
2.923244019
1415674_a_at
3.252853031
1415675_at
3.267406419
1415676_a_at
3.909983695
1415677_at
2.958085849
1415678_at
3.65724713
1415679_at
3.851319513
1415680_at
3.557146142
1415681_at
3.437433444
1415682_at
3.208978517
1415683_at
3.854306042
1415684_at
3.276461804
1415685_at
3.197831693
1415686_at
3.580354661
1415687_a_at
4.183269844
1415688_at
3.830267801
1415689_s_at
3.66996737
Total number of rows:
45101
Table truncated, full table size
1023 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM139123.CEL.gz
6.2 Mb
(ftp)
(http)
CEL
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