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GEO accession:
Sample GSM139124
Query DataSets for GSM139124
Status
Public on Apr 09, 2007
Title
Ovarian_Tumor_1030T
Sample type
RNA
Source name
Ovarian_Tumor
Organism
Mus musculus
Characteristics
Strain: C57BL6/J (with Apc loxP/loxP and Pten loxP/loxP)
Gender: Female
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label
biotin
Label protocol
3-5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Tissue: Ovary tumor
Data processing
Ann Arbor quantile-normalized trimmed-mean method
Submission date
Oct 06, 2006
Last update date
Aug 28, 2018
Contact name
Rork Kuick
E-mail(s)
rork@umich.edu
Phone
734-936-9241
Organization name
University of Michigan
Street address
University of Michigan, SPH II, 1415 Washington Heights, Room M2533
City
Ann Arbor
State/province
MI
ZIP/Postal code
48109-2029
Country
USA
Platform ID
GPL1261
Series (1)
GSE5987
Mouse model of Endometrioid Ovarian Adenocarcinomas by conditional inactivation of PTEN and APC genes
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
quantile-normalized trimmed-mean, log-transformed with log(max(x+50,0)+50) using base 10 logarithms
Data table
ID_REF
VALUE
1415670_at
3.6198235
1415671_at
3.716170348
1415672_at
3.906388921
1415673_at
2.98721923
1415674_a_at
3.476541809
1415675_at
3.326130957
1415676_a_at
3.943988875
1415677_at
3.27392678
1415678_at
3.633266411
1415679_at
3.881897974
1415680_at
3.605843539
1415681_at
3.547651658
1415682_at
3.179838928
1415683_at
3.845346137
1415684_at
3.197556213
1415685_at
3.168497484
1415686_at
3.662568967
1415687_a_at
4.228990311
1415688_at
3.804548308
1415689_s_at
3.650987094
Total number of rows:
45101
Table truncated, full table size
1020 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM139124.CEL.gz
6.3 Mb
(ftp)
(http)
CEL
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