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GEO accession:
Sample GSM139125
Query DataSets for GSM139125
Status
Public on Apr 09, 2007
Title
Ovarian_Tumor_1040T
Sample type
RNA
Source name
Ovarian_Tumor
Organism
Mus musculus
Characteristics
Strain: C57BL6/J (with Apc loxP/loxP and Pten loxP/loxP)
Gender: Female
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label
biotin
Label protocol
3-5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Tissue: Ovary tumor
Data processing
Ann Arbor quantile-normalized trimmed-mean method
Submission date
Oct 06, 2006
Last update date
Aug 28, 2018
Contact name
Rork Kuick
E-mail(s)
rork@umich.edu
Phone
734-936-9241
Organization name
University of Michigan
Street address
University of Michigan, SPH II, 1415 Washington Heights, Room M2533
City
Ann Arbor
State/province
MI
ZIP/Postal code
48109-2029
Country
USA
Platform ID
GPL1261
Series (1)
GSE5987
Mouse model of Endometrioid Ovarian Adenocarcinomas by conditional inactivation of PTEN and APC genes
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
quantile-normalized trimmed-mean, log-transformed with log(max(x+50,0)+50) using base 10 logarithms
Data table
ID_REF
VALUE
1415670_at
3.538950562
1415671_at
3.686636269
1415672_at
3.955976222
1415673_at
3.015778756
1415674_a_at
3.597695186
1415675_at
3.310055738
1415676_a_at
3.966141733
1415677_at
3.292256071
1415678_at
3.665580991
1415679_at
3.909020854
1415680_at
3.585573519
1415681_at
3.586587305
1415682_at
3.161368002
1415683_at
3.821644518
1415684_at
3.171141151
1415685_at
3.115610512
1415686_at
3.662474504
1415687_a_at
4.158784518
1415688_at
3.83282813
1415689_s_at
3.611723308
Total number of rows:
45101
Table truncated, full table size
1021 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM139125.CEL.gz
6.1 Mb
(ftp)
(http)
CEL
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