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Sample GSM139233

Query DataSets for GSM139233

Status

Public on Aug 03, 2009

Title

Liver irradiated 1Gy 3h rep5

Sample type

RNA

Channel 1

Source name

Non-Irradiated Liver

Organism

Mus musculus

Characteristics

Organism Part:Liver
Strain:C57/bl6
total RNA was isolated using RNeasy kit

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Irradiated Liver

Organism

Mus musculus

Characteristics

Organism Part:Liver
Strain:C57/bl6
Liver was removed 3 hours after whole body gamma irradiation of a single dose (1Gy)
total RNA was isolated using RNeasy kit

Extracted molecule

total RNA

Label

Cy5

Description

totalRNA sample from non-irradiated liver was labeled in Cy3 and hybridized against totalRNA sample from irradiated liver labeled in Cy5.

Data processing

lowess normalization using Genespring 6.0

Submission date

Oct 09, 2006

Last update date

Aug 03, 2009

Contact name

Alexandre Pawlik

Phone

33 (0) 1 60 87 53 16

Fax

33 (0) 1 60 87 34 98

Organization name

CEA

Department

DSV/DRR

Lab

SGF/GRH

Street address

2, rue Gaston Crémieux

City

Evry

ZIP/Postal code

91000

Country

France

Platform ID

GPL4376

Series (1)

GSE5994

Gene expression in the liver following exposition to 1Gy ionizing radiation

Data table header descriptions
ID_REF
VALUE	log2(RedMedian)-log2(GreenMedian)
F532 Median	Median feature pixel intensity at green wavelength
F635 Median	Median feature pixel intensity at red wavelength
Flags	Type of flag associated with a feature

Data table
ID_REF	VALUE	F532 Median	F635 Median	Flags
1.1.1	-0.24812679447724567	905	762	0
1.2.1	-0.6848094017656492	1159	721	0
1.3.1	-0.5169935770451611	767	536	0
1.4.1	-0.8484669163460069	614	341	0
1.5.1	-0.591719866896465	1177	781	0
1.6.1	-0.17950302819060596	2248	1985	0
1.7.1	-0.15336165482696987	2479	2229	0
1.8.1	-0.7268235837455923	945	571	0
1.9.1	-0.5263208328125887	229	159	-50
1.10.1	-0.6065186440876036	236	155	-50
1.11.1	-0.6110753410402875	223	146	-50
1.12.1	-0.5445830392053169	229	157	-50
1.13.1	-0.6031098474314157	240	158	-50
1.14.1	-0.9056076297250454	562	300	0
1.15.1	-0.8601245973090894	884	487	0
1.16.1	-0.4866604271093523	234	167	-50
1.1.2	-0.5575470431407558	1251	850	0
1.2.2	-0.6879162450494272	1147	712	0
1.3.2	-0.49428483309193966	1503	1067	0
1.4.2	-0.8789287661068408	2376	1292	0

Total number of rows: 9216

Table truncated, full table size 348 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM139233.gpr.gz	658.1 Kb	(ftp)(http)	GPR
Processed data included within Sample table