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GEO accession:
Sample GSM139234
Query DataSets for GSM139234
Status
Public on Aug 03, 2009
Title
Liver irradiated 1Gy 3h rep6
Sample type
RNA
Channel 1
Source name
Irradiated Liver
Organism
Mus musculus
Characteristics
Organism Part:Liver
Strain:C57/bl6
Liver was removed 3 hours after whole body gamma irradiation of a single dose (1Gy)
total RNA was isolated using RNeasy kit
Extracted molecule
total RNA
Label
Cy3
Channel 2
Source name
Non-Irradiated Liver
Organism
Mus musculus
Characteristics
Organism Part:Liver
Strain:C57/bl6
total RNA was isolated using RNeasy kit
Extracted molecule
total RNA
Label
Cy5
Description
totalRNA sample from non-irradiated liver was labeled in Cy5 and hybridized against totalRNA sample from irradiated liver labeled in Cy3.
Data processing
lowess normalization using Genespring 6.0
Submission date
Oct 09, 2006
Last update date
Aug 03, 2009
Contact name
Alexandre Pawlik
Phone
33 (0) 1 60 87 53 16
Fax
33 (0) 1 60 87 34 98
Organization name
CEA
Department
DSV/DRR
Lab
SGF/GRH
Street address
2, rue Gaston Crémieux
City
Evry
ZIP/Postal code
91000
Country
France
Platform ID
GPL4376
Series (1)
GSE5994
Gene expression in the liver following exposition to 1Gy ionizing radiation
Data table header descriptions
ID_REF
VALUE
log2(RedMedian)-log2(GreenMedian)
F532 Median
Median feature pixel intensity at green wavelength
F635 Median
Median feature pixel intensity at red wavelength
Flags
Type of flag associated with a feature
Data table
ID_REF
VALUE
F532 Median
F635 Median
Flags
1.1.1
0.632268215499513
380
589
0
1.2.1
0.5856623285500081
687
1031
0
1.3.1
0.7902993505468386
547
946
0
1.4.1
1.040988411450839
347
714
0
1.5.1
0.565871739570134
710
1051
0
1.6.1
0.06745816559036566
1525
1598
0
1.7.1
0.1766952983609552
2433
2750
0
1.8.1
0.6307661903342809
589
912
0
1.9.1
1.2843449120792059
140
341
-50
1.10.1
1.3390522726785716
134
339
-50
1.11.1
1.3282326717415713
137
344
-50
1.12.1
1.4377365475379784
134
363
-50
1.13.1
1.2425703032740782
142
336
-50
1.14.1
0.8624964762500651
308
560
0
1.15.1
0.900801050698692
459
857
0
1.16.1
1.2638520284348158
147
353
-50
1.1.2
0.6276181979778453
822
1270
0
1.2.2
0.5563103133267515
695
1022
0
1.3.2
0.4661844008890854
1337
1847
0
1.4.2
0.90994607512879
1132
2127
0
Total number of rows:
9216
Table truncated, full table size
339 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM139234.gpr.gz
674.9 Kb
(ftp)
(http)
GPR
Processed data included within Sample table
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