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Sample GSM139237

Query DataSets for GSM139237

Status

Public on Aug 03, 2009

Title

Liver irradiated 1Gy 3h rep9

Sample type

RNA

Channel 1

Source name

Non-Irradiated Liver

Organism

Mus musculus

Characteristics

Organism Part:Liver
Strain:C57/bl6
total RNA was isolated using RNeasy kit

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Irradiated Liver

Organism

Mus musculus

Characteristics

Organism Part:Liver
Strain:C57/bl6
Liver was removed 3 hours after whole body gamma irradiation of a single dose (1Gy)
total RNA was isolated using RNeasy kit

Extracted molecule

total RNA

Label

Cy5

Description

totalRNA sample from non-irradiated liver was labeled in Cy3 and hybridized against totalRNA sample from irradiated liver labeled in Cy5.

Data processing

lowess normalization using Genespring 6.0

Submission date

Oct 09, 2006

Last update date

Aug 03, 2009

Contact name

Alexandre Pawlik

Phone

33 (0) 1 60 87 53 16

Fax

33 (0) 1 60 87 34 98

Organization name

CEA

Department

DSV/DRR

Lab

SGF/GRH

Street address

2, rue Gaston Crémieux

City

Evry

ZIP/Postal code

91000

Country

France

Platform ID

GPL4376

Series (1)

GSE5994

Gene expression in the liver following exposition to 1Gy ionizing radiation

Data table header descriptions
ID_REF
VALUE	log2(RedMedian)-log2(GreenMedian)
F532 Median	Median feature pixel intensity at green wavelength
F635 Median	Median feature pixel intensity at red wavelength
Flags	Type of flag associated with a feature

Data table
ID_REF	VALUE	F532 Median	F635 Median	Flags
1.1.1	-1.275941889613182	247	102	-50
1.2.1	-1.3805098161505729	289	111	-50
1.3.1	-1.3862785062974199	298	114	-50
1.4.1	-1.2747941192962675	271	112	-50
1.5.1	-1.1664611461387409	312	139	-50
1.6.1	-0.4679039999226486	491	355	0
1.7.1	-0.19483929135530775	752	657	0
1.8.1	-1.1550307861426181	265	119	-50
1.9.1	-1.5376567859427994	270	93	-50
1.10.1	-1.5434432312828892	274	94	-50
1.11.1	-1.5585870852968586	271	92	-50
1.12.1	-1.5952675091128947	281	93	-50
1.13.1	-1.4703199347800338	266	96	-50
1.14.1	-1.361907532856008	311	121	-50
1.15.1	-1.2002236019753512	409	178	0
1.16.1	-1.5552151573271042	288	98	-50
1.1.2	-0.9373055583514687	743	388	0
1.2.2	-0.936806173512806	603	315	0
1.3.2	-0.46273424131014024	820	595	0
1.4.2	-0.8535339713816765	992	549	0

Total number of rows: 9216

Table truncated, full table size 345 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM139237.gpr.gz	640.3 Kb	(ftp)(http)	GPR
Processed data included within Sample table