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GEO accession:
Sample GSM139238
Query DataSets for GSM139238
Status
Public on Aug 03, 2009
Title
Liver irradiated 1Gy 3h rep10
Sample type
RNA
Channel 1
Source name
Irradiated Liver
Organism
Mus musculus
Characteristics
Organism Part:Liver
Strain:C57/bl6
Liver was removed 3 hours after whole body gamma irradiation of a single dose (1Gy)
total RNA was isolated using RNeasy kit
Extracted molecule
total RNA
Label
Cy3
Channel 2
Source name
Non-Irradiated Liver
Organism
Mus musculus
Characteristics
Organism Part:Liver
Strain:C57/bl6
total RNA was isolated using RNeasy kit
Extracted molecule
total RNA
Label
Cy5
Description
totalRNA sample from non-irradiated liver was labeled in Cy5 and hybridized against totalRNA sample from irradiated liver labeled in Cy3.
Data processing
lowess normalization using Genespring 6.0
Submission date
Oct 09, 2006
Last update date
Aug 03, 2009
Contact name
Alexandre Pawlik
Phone
33 (0) 1 60 87 53 16
Fax
33 (0) 1 60 87 34 98
Organization name
CEA
Department
DSV/DRR
Lab
SGF/GRH
Street address
2, rue Gaston Crémieux
City
Evry
ZIP/Postal code
91000
Country
France
Platform ID
GPL4376
Series (1)
GSE5994
Gene expression in the liver following exposition to 1Gy ionizing radiation
Data table header descriptions
ID_REF
VALUE
log2(RedMedian)-log2(GreenMedian)
F532 Median
Median feature pixel intensity at green wavelength
F635 Median
Median feature pixel intensity at red wavelength
Flags
Type of flag associated with a feature
Data table
ID_REF
VALUE
F532 Median
F635 Median
Flags
1.1.1
-1.9349049717781153
325
85
-50
1.2.1
-1.8456142552439563
363
101
-50
1.3.1
-1.9251460053157865
338
89
-50
1.4.1
-1.9045428407520957
307
82
-50
1.5.1
-1.9226579114668352
345
91
-50
1.6.1
-1.9650474011655754
367
94
-50
1.7.1
-1.8759587360566279
323
88
-50
1.8.1
-1.8242287406220001
301
85
-50
1.9.1
-1.941447817644887
338
88
-50
1.10.1
-1.9370687442735433
314
82
-50
1.11.1
-0.882430403618824
424
230
0
1.12.1
-1.8839029350771288
358
97
-50
1.13.1
-1.9956998625663747
335
84
-50
1.14.1
-2.0845335102116676
369
87
-50
1.15.1
-1.8216627587414878
304
86
-50
1.16.1
-1.8166927866369404
310
88
-50
1.1.2
-2.177361590284094
389
86
-50
1.2.2
-2.2895066171949847
396
81
-50
1.3.2
-2.191014606824167
379
83
-50
1.4.2
-1.9102033296493541
327
87
-50
Total number of rows:
9216
Table truncated, full table size
344 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM139238.gpr.gz
635.6 Kb
(ftp)
(http)
GPR
Processed data included within Sample table
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