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GEO accession:
Sample GSM139241
Query DataSets for GSM139241
Status
Public on Aug 03, 2009
Title
Liver irradiated 1Gy 3h rep13
Sample type
RNA
Channel 1
Source name
Irradiated Liver
Organism
Mus musculus
Characteristics
Organism Part:Liver
Strain:C57/bl6
Liver was removed 3 hours after whole body gamma irradiation of a single dose (1Gy)
total RNA was isolated using RNeasy kit
Extracted molecule
total RNA
Label
Cy3
Channel 2
Source name
Non-Irradiated Liver
Organism
Mus musculus
Characteristics
Organism Part:Liver
Strain:C57/bl6
total RNA was isolated using RNeasy kit
Extracted molecule
total RNA
Label
Cy5
Description
totalRNA sample from non-irradiated liver was labeled in Cy5 and hybridized against totalRNA sample from irradiated liver labeled in Cy3.
Data processing
lowess normalization using Genespring 6.0
Submission date
Oct 09, 2006
Last update date
Aug 03, 2009
Contact name
Alexandre Pawlik
Phone
33 (0) 1 60 87 53 16
Fax
33 (0) 1 60 87 34 98
Organization name
CEA
Department
DSV/DRR
Lab
SGF/GRH
Street address
2, rue Gaston Crémieux
City
Evry
ZIP/Postal code
91000
Country
France
Platform ID
GPL4377
Series (1)
GSE5994
Gene expression in the liver following exposition to 1Gy ionizing radiation
Data table header descriptions
ID_REF
VALUE
log2(RedMedian)-log2(GreenMedian)
F532 Median
Median feature pixel intensity at green wavelength
F635 Median
Median feature pixel intensity at red wavelength
Flags
Type of flag associated with a feature
Data table
ID_REF
VALUE
F532 Median
F635 Median
Flags
1.1.1
-1.4444121014123574
215
79
-50
1.2.1
-1.5733278002377529
247
83
-50
1.3.1
-1.5286000581020438
251
87
-50
1.4.1
-1.5672604989876973
243
82
-50
1.5.1
-0.5321458022777081
295
204
0
1.6.1
-1.060120992437571
392
188
0
1.7.1
-0.354819976444737
610
477
0
1.8.1
-1.272079545436801
256
106
-50
1.9.1
-1.3600890898809532
249
97
-50
1.10.1
-1.560714954474479
236
80
-50
1.11.1
-1.5542002469504692
232
79
-50
1.12.1
-1.597399603959379
233
77
-50
1.13.1
-1.4891467133073557
233
83
-50
1.14.1
-1.368781908317971
266
103
0
1.15.1
-0.8147344524232016
343
195
0
1.16.1
-1.5484366246960422
234
80
-50
1.1.2
-1.2455377579843088
377
159
0
1.2.2
-0.5015464925335187
378
267
0
1.3.2
-0.6408325048361316
566
363
0
1.4.2
-0.3214414377598302
741
593
0
Total number of rows:
9216
Table truncated, full table size
343 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM139241.gpr.gz
712.0 Kb
(ftp)
(http)
GPR
Processed data included within Sample table
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