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Sample GSM1395237 Query DataSets for GSM1395237
Status Public on Sep 01, 2014
Title WT3
Sample type RNA
 
Source name KMS11 cells
Organism Homo sapiens
Characteristics parental cell line: KMS11
cell type: multiple myeloma cell line
genotype/variation: WT
Growth protocol Cells were grown in RPMI 1640 supplemented with 10% FBS and 1% Pen/Strep.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the RNeasy Mini Kit from Qiagen (Cat. No. 74104) in accordance with the prescribed protocol provided with the kit.
Label Cy3
Label protocol Biotin-UTP labeled using the Illumina TotalPrep RNA Amplification Kit (Ambion).
 
Hybridization protocol cRNA was hybridized to the Illumina HumanWG-6 v3.0 Expression BeadChip using standard protocols (provided by Illumina).
Scan protocol The arrays were scanned on an Illumina BeadArray Reader.
Description Replicate 3 of 3.
Data processing The data was processed using GenomeStudio.
 
Submission date May 21, 2014
Last update date Sep 01, 2014
Contact name Relja Popovic
E-mail(s) r-popovic@northwestern.edu
Organization name Northwestern University
Street address 303 East Superior Street
City Chicago
ZIP/Postal code 60611
Country USA
 
Platform ID GPL6884
Series (1)
GSE57863 MMSET regulation of gene expression in t(4;14)+ myeloma

Data table header descriptions
ID_REF
VALUE Quantile-normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 29.8 0.01449
ILMN_2055271 15.2 0.04216
ILMN_1736007 -4.3 0.62451
ILMN_2383229 3.1 0.23715
ILMN_1806310 -3.6 0.5639
ILMN_1779670 2 0.26219
ILMN_2321282 12.1 0.06192
ILMN_1671474 10.5 0.07773
ILMN_1772582 1 0.3083
ILMN_1735698 -3.4 0.55336
ILMN_1653355 8.8 0.10277
ILMN_1717783 -8.8 0.89987
ILMN_1705025 -4.6 0.65217
ILMN_1814316 -6 0.7444
ILMN_2359168 2.2 0.2556
ILMN_1731507 -4.4 0.62582
ILMN_1787689 4 0.20817
ILMN_1745607 -10 0.94862
ILMN_2136495 -7.5 0.84058
ILMN_1668111 -9.6 0.92622

Total number of rows: 48803

Table truncated, full table size 1174 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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