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Sample GSM1395239 Query DataSets for GSM1395239
Status Public on Sep 01, 2014
Title NTKO2
Sample type RNA
 
Source name NTKO cells
Organism Homo sapiens
Characteristics parental cell line: KMS11
cell type: multiple myeloma cell line
genotype/variation: wild type MMSET allele inactivated
Growth protocol Cells were grown in RPMI 1640 supplemented with 10% FBS and 1% Pen/Strep.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the RNeasy Mini Kit from Qiagen (Cat. No. 74104) in accordance with the prescribed protocol provided with the kit.
Label Cy3
Label protocol Biotin-UTP labeled using the Illumina TotalPrep RNA Amplification Kit (Ambion).
 
Hybridization protocol cRNA was hybridized to the Illumina HumanWG-6 v3.0 Expression BeadChip using standard protocols (provided by Illumina).
Scan protocol The arrays were scanned on an Illumina BeadArray Reader.
Description Replicate 2 of 3.
Data processing The data was processed using GenomeStudio.
 
Submission date May 21, 2014
Last update date Sep 01, 2014
Contact name Relja Popovic
E-mail(s) r-popovic@northwestern.edu
Organization name Northwestern University
Street address 303 East Superior Street
City Chicago
ZIP/Postal code 60611
Country USA
 
Platform ID GPL6884
Series (1)
GSE57863 MMSET regulation of gene expression in t(4;14)+ myeloma

Data table header descriptions
ID_REF
VALUE Quantile-normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 19.8 0.0448
ILMN_2055271 4.5 0.19499
ILMN_1736007 -4.1 0.62582
ILMN_2383229 7 0.1357
ILMN_1806310 -2.9 0.54809
ILMN_1779670 -1.5 0.45455
ILMN_2321282 2.6 0.25165
ILMN_1671474 0.1 0.35573
ILMN_1772582 -0.6 0.39526
ILMN_1735698 3.9 0.21344
ILMN_1653355 15.4 0.05534
ILMN_1717783 -6.2 0.77602
ILMN_1705025 -5.7 0.74572
ILMN_1814316 7.6 0.12385
ILMN_2359168 -8.5 0.88933
ILMN_1731507 -7.1 0.83004
ILMN_1787689 9 0.10804
ILMN_1745607 -6.9 0.82345
ILMN_2136495 -11.8 0.99078
ILMN_1668111 -9.7 0.94466

Total number of rows: 48803

Table truncated, full table size 1179 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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