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Sample GSM139540 Query DataSets for GSM139540
Status Public on Dec 19, 2008
Title HB03
Sample type RNA
 
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics Label : npCR
Estrogen Receptor : Ep
Progesterone Receptor : Pp
Size: T2
Node: N0
Treatment protocol none
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Mini Kit
Label biotin
Label protocol standard Affymetrix procedure
 
Hybridization protocol Standard Affymetrix procedure
Scan protocol Standard Affymetrix procedure
Description Series of 102 tumours
Data processing RMA
 
Submission date Oct 11, 2006
Last update date Jun 06, 2022
Contact name Mauro Delorenzi
E-mail(s) Mauro.Delorenzi@unil.ch
Organization name Swiss Institute of Bioinformatics
Lab BCF
Street address GĂ©nopode Building, Quartier Sorge
City Lausanne
ZIP/Postal code 1015
Country Switzerland
 
Platform ID GPL1352
Series (1)
GSE4779 A stroma-related gene signature predicts sensitivity to epirubicin-containing neoadjuvant chemotherapy in breast cancer.
Relations
Reanalyzed by GSE205568

Data table header descriptions
ID_REF
VALUE RMA-calculated signal intensity

Data table
ID_REF VALUE
1053_3p_at 8.01620314098499
117_3p_at 7.66051893619889
1494_3p_f_at 7.65921830973155
1552275_3p_s_at 7.66831169282318
1552281_3p_at 9.14119400263916
1552296_3p_at 5.81958181366743
1552302_3p_at 6.85167658028281
1552311_3p_a_at 8.2665859177553
1552321_3p_a_at 4.60302900133538
1552340_3p_at 6.56012240386518
1552343_3p_s_at 7.04562305838309
1552354_3p_at 7.5743492408443
1552476_3p_s_at 7.61431073195216
1552480_3p_s_at 3.53238455342128
1552504_3p_a_at 7.80150417158746
1552518_3p_s_at 5.1472723877035
1552528_3p_at 8.19098301324696
1552535_3p_at 8.09245462363544
1552566_3p_at 6.75046445777328
1552575_3p_a_at 7.91350377071183

Total number of rows: 61297

Table truncated, full table size 2186 Kbytes.




Supplementary file Size Download File type/resource
gsm139540.cel.gz 8.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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