GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM139550
Query DataSets for GSM139550
Status
Public on Dec 19, 2008
Title
HB13
Sample type
RNA
Source name
Human Breast Tumor
Organism
Homo sapiens
Characteristics
Label : pCR
Estrogen Receptor : En
Progesterone Receptor : Pn
Size: T2
Node: N1
Treatment protocol
none
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
biotin
Label protocol
standard Affymetrix procedure
Hybridization protocol
Standard Affymetrix procedure
Scan protocol
Standard Affymetrix procedure
Description
Series of 102 tumours
Data processing
RMA
Submission date
Oct 11, 2006
Last update date
Jun 06, 2022
Contact name
Mauro Delorenzi
E-mail(s)
Mauro.Delorenzi@unil.ch
Organization name
Swiss Institute of Bioinformatics
Lab
BCF
Street address
Génopode Building, Quartier Sorge
City
Lausanne
ZIP/Postal code
1015
Country
Switzerland
Platform ID
GPL1352
Series (1)
GSE4779
A stroma-related gene signature predicts sensitivity to epirubicin-containing neoadjuvant chemotherapy in breast cancer.
Relations
Reanalyzed by
GSE205568
Data table header descriptions
ID_REF
VALUE
RMA-calculated signal intensity
Data table
ID_REF
VALUE
1053_3p_at
8.83139970621847
117_3p_at
7.89887847572113
1494_3p_f_at
7.60165647286483
1552275_3p_s_at
7.24070621578637
1552281_3p_at
9.56485651241547
1552296_3p_at
5.91815430594083
1552302_3p_at
6.30572480252653
1552311_3p_a_at
8.27405122205398
1552321_3p_a_at
4.60301913345737
1552340_3p_at
7.05996687013022
1552343_3p_s_at
6.79668733600554
1552354_3p_at
7.39468494466834
1552476_3p_s_at
7.64303610120067
1552480_3p_s_at
3.36362684826947
1552504_3p_a_at
8.0558482483978
1552518_3p_s_at
5.59533228161457
1552528_3p_at
8.22427616569002
1552535_3p_at
7.97590494619113
1552566_3p_at
6.81688057762394
1552575_3p_a_at
7.59838268159002
Total number of rows:
61297
Table truncated, full table size
2186 Kbytes
.
Supplementary file
Size
Download
File type/resource
gsm139550.cel.gz
8.7 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
