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GEO accession:
Sample GSM139558
Query DataSets for GSM139558
Status
Public on Dec 19, 2008
Title
HB21
Sample type
RNA
Source name
Human Breast Tumor
Organism
Homo sapiens
Characteristics
Label : pCR
Estrogen Receptor : Ep
Progesterone Receptor : Pp
Size: T3
Node: N0
Treatment protocol
none
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
biotin
Label protocol
standard Affymetrix procedure
Hybridization protocol
Standard Affymetrix procedure
Scan protocol
Standard Affymetrix procedure
Description
Series of 102 tumours
Data processing
RMA
Submission date
Oct 11, 2006
Last update date
Jun 06, 2022
Contact name
Mauro Delorenzi
E-mail(s)
Mauro.Delorenzi@unil.ch
Organization name
Swiss Institute of Bioinformatics
Lab
BCF
Street address
Génopode Building, Quartier Sorge
City
Lausanne
ZIP/Postal code
1015
Country
Switzerland
Platform ID
GPL1352
Series (1)
GSE4779
A stroma-related gene signature predicts sensitivity to epirubicin-containing neoadjuvant chemotherapy in breast cancer.
Relations
Reanalyzed by
GSE205568
Data table header descriptions
ID_REF
VALUE
RMA-calculated signal intensity
Data table
ID_REF
VALUE
1053_3p_at
8.35999062713148
117_3p_at
7.85237125021755
1494_3p_f_at
7.50606924281276
1552275_3p_s_at
7.68653543255746
1552281_3p_at
9.17991428731146
1552296_3p_at
5.5823756569942
1552302_3p_at
5.79107166361632
1552311_3p_a_at
8.28541618339321
1552321_3p_a_at
4.90634962418512
1552340_3p_at
6.65858579239068
1552343_3p_s_at
6.98830424196112
1552354_3p_at
7.66649242226174
1552476_3p_s_at
7.91115046747682
1552480_3p_s_at
3.68986432900346
1552504_3p_a_at
7.64309848130896
1552518_3p_s_at
5.29307344670825
1552528_3p_at
8.10271981955848
1552535_3p_at
7.87176433076596
1552566_3p_at
6.77351420676851
1552575_3p_a_at
8.11442295335888
Total number of rows:
61297
Table truncated, full table size
2186 Kbytes
.
Supplementary file
Size
Download
File type/resource
gsm139558.cel.gz
8.7 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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