GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM139579
Query DataSets for GSM139579
Status
Public on Dec 19, 2008
Title
HB42
Sample type
RNA
Source name
Human Breast Tumor
Organism
Homo sapiens
Characteristics
Label : pCR
Estrogen Receptor : Ep
Progesterone Receptor : Pp
Size: T3
Node: N1
Treatment protocol
none
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
biotin
Label protocol
standard Affymetrix procedure
Hybridization protocol
Standard Affymetrix procedure
Scan protocol
Standard Affymetrix procedure
Description
Series of 102 tumours
Data processing
RMA
Submission date
Oct 11, 2006
Last update date
Jun 06, 2022
Contact name
Mauro Delorenzi
E-mail(s)
Mauro.Delorenzi@unil.ch
Organization name
Swiss Institute of Bioinformatics
Lab
BCF
Street address
Génopode Building, Quartier Sorge
City
Lausanne
ZIP/Postal code
1015
Country
Switzerland
Platform ID
GPL1352
Series (1)
GSE4779
A stroma-related gene signature predicts sensitivity to epirubicin-containing neoadjuvant chemotherapy in breast cancer.
Relations
Reanalyzed by
GSE205568
Data table header descriptions
ID_REF
VALUE
RMA-calculated signal intensity
Data table
ID_REF
VALUE
1053_3p_at
8.5051117399461
117_3p_at
7.52460957204013
1494_3p_f_at
7.69837580178346
1552275_3p_s_at
7.83156884920106
1552281_3p_at
9.13573860842683
1552296_3p_at
5.85946365437656
1552302_3p_at
6.22439775610407
1552311_3p_a_at
8.31583310918162
1552321_3p_a_at
4.96085964165778
1552340_3p_at
6.54510336324614
1552343_3p_s_at
7.13668237354847
1552354_3p_at
7.39704421962502
1552476_3p_s_at
7.51857334814002
1552480_3p_s_at
3.681415510721
1552504_3p_a_at
7.65125747202158
1552518_3p_s_at
5.54500397224414
1552528_3p_at
8.32516921528589
1552535_3p_at
8.0540922179245
1552566_3p_at
6.66357650046741
1552575_3p_a_at
7.32397978321614
Total number of rows:
61297
Table truncated, full table size
2186 Kbytes
.
Supplementary file
Size
Download
File type/resource
gsm139579.cel.gz
8.6 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
