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Sample GSM139676 Query DataSets for GSM139676
Status Public on Oct 21, 2006
Title NRMRL control replicate01, batch032405
Sample type RNA
 
Source name murine small intestinal cell culture, uninfected, 5 hours
Organism Mus musculus
Characteristics mouse intestinal tissue, cell line MICcl2
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 11, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60735_M430-2_CEPAC01_Stat Pairs Probe set pairs
EPA05020_60735_M430-2_CEPAC01_Stat Pairs Used Probe set pairs used in signal determination
VALUE normalized (scaled) signal count
ABS_CALL present or absent call from software
DETECTION P-VALUE detection p-value

Data table
ID_REF EPA05020_60735_M430-2_CEPAC01_Stat Pairs EPA05020_60735_M430-2_CEPAC01_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 248.0 P 0.001593
AFFX-BioB-M_at 20 20 327.0 P 0.000147
AFFX-BioB-3_at 20 20 189.7 P 0.000972
AFFX-BioC-5_at 20 20 835.9 P 0.000060
AFFX-BioC-3_at 20 20 966.6 P 0.000044
AFFX-BioDn-5_at 20 20 1131.8 P 0.000044
AFFX-BioDn-3_at 20 20 3636.1 P 0.000110
AFFX-CreX-5_at 20 20 8909.0 P 0.000060
AFFX-CreX-3_at 20 20 9703.0 P 0.000044
AFFX-DapX-5_at 20 20 16.0 A 0.368438
AFFX-DapX-M_at 20 20 29.0 A 0.185131
AFFX-DapX-3_at 20 20 7.3 A 0.814869
AFFX-LysX-5_at 20 20 2.4 A 0.868639
AFFX-LysX-M_at 20 20 6.4 A 0.852061
AFFX-LysX-3_at 20 20 28.4 P 0.039648
AFFX-PheX-5_at 20 20 1.6 A 0.966323
AFFX-PheX-M_at 20 20 1.2 A 0.981719
AFFX-PheX-3_at 20 20 22.8 A 0.340661
AFFX-ThrX-5_at 20 20 4.3 A 0.941556
AFFX-ThrX-M_at 20 20 16.3 A 0.500000

Total number of rows: 45101

Table truncated, full table size 1492 Kbytes.




Supplementary file Size Download File type/resource
GSM139676.CEL.gz 6.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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