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Sample GSM139687 Query DataSets for GSM139687
Status Public on Oct 21, 2006
Title NRMRL test replicate01, EPA1, batch032405
Sample type RNA
 
Source name murine small intestinal tissue
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 11, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60740_M430-2_CEPA0101_Stat Pairs total probe sets
EPA05020_60740_M430-2_CEPA0101_Stat Pairs Used probe sets used
VALUE normalized intensity values
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60740_M430-2_CEPA0101_Stat Pairs EPA05020_60740_M430-2_CEPA0101_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 275.0 P 0.001593
AFFX-BioB-M_at 20 20 348.5 P 0.000081
AFFX-BioB-3_at 20 20 153.0 P 0.000095
AFFX-BioC-5_at 20 20 907.3 P 0.000052
AFFX-BioC-3_at 20 20 1068.3 P 0.000044
AFFX-BioDn-5_at 20 20 1599.8 P 0.000044
AFFX-BioDn-3_at 20 20 5027.5 P 0.000127
AFFX-CreX-5_at 20 20 10668.8 P 0.000052
AFFX-CreX-3_at 20 20 12319.7 P 0.000044
AFFX-DapX-5_at 20 20 6.4 A 0.485109
AFFX-DapX-M_at 20 20 25.1 A 0.396920
AFFX-DapX-3_at 20 20 33.4 A 0.382599
AFFX-LysX-5_at 20 20 1.6 A 0.949771
AFFX-LysX-M_at 20 20 8.4 A 0.834139
AFFX-LysX-3_at 20 20 10.0 A 0.411380
AFFX-PheX-5_at 20 20 2.6 A 0.937071
AFFX-PheX-M_at 20 20 4.7 A 0.737173
AFFX-PheX-3_at 20 20 12.5 A 0.514890
AFFX-ThrX-5_at 20 20 5.0 A 0.794288
AFFX-ThrX-M_at 20 20 4.5 A 0.574070

Total number of rows: 45101

Table truncated, full table size 1492 Kbytes.




Supplementary file Size Download File type/resource
GSM139687.CEL.gz 6.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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