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Sample GSM139688 Query DataSets for GSM139688
Status Public on Oct 21, 2006
Title NRMRL test replicate02, EPA1 batch032405
Sample type RNA
 
Source name murine small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 11, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60741_M430-2_CEPA0103_Stat Pairs total probe sets
EPA05020_60741_M430-2_CEPA0103_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL presnt, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60741_M430-2_CEPA0103_Stat Pairs EPA05020_60741_M430-2_CEPA0103_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 248.3 P 0.001102
AFFX-BioB-M_at 20 20 418.4 P 0.000070
AFFX-BioB-3_at 20 20 223.2 P 0.000070
AFFX-BioC-5_at 20 20 892.5 P 0.000052
AFFX-BioC-3_at 20 20 1147.3 P 0.000052
AFFX-BioDn-5_at 20 20 1534.6 P 0.000044
AFFX-BioDn-3_at 20 20 4952.1 P 0.000095
AFFX-CreX-5_at 20 20 10398.7 P 0.000052
AFFX-CreX-3_at 20 20 12050.1 P 0.000044
AFFX-DapX-5_at 20 20 4.2 A 0.672949
AFFX-DapX-M_at 20 20 7.0 A 0.617401
AFFX-DapX-3_at 20 20 7.0 A 0.760937
AFFX-LysX-5_at 20 20 3.1 A 0.672921
AFFX-LysX-M_at 20 20 9.1 A 0.737191
AFFX-LysX-3_at 20 20 25.5 M 0.062929
AFFX-PheX-5_at 20 20 2.2 A 0.993813
AFFX-PheX-M_at 20 20 3.1 A 0.814869
AFFX-PheX-3_at 20 20 43.0 A 0.287743
AFFX-ThrX-5_at 20 20 5.2 A 0.834139
AFFX-ThrX-M_at 20 20 5.4 A 0.617401

Total number of rows: 45101

Table truncated, full table size 1493 Kbytes.




Supplementary file Size Download File type/resource
GSM139688.CEL.gz 6.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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