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Sample GSM139689 Query DataSets for GSM139689
Status Public on Oct 21, 2006
Title NRMRL test replicate03, EPA1 batch032405
Sample type RNA
 
Source name murine small intestine cell culture, 5 hour infection
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 11, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60742_M430-2_CEPA0104_Stat Pairs total probe sets
EPA05020_60742_M430-2_CEPA0104_Stat Pairs Used probe sets used
VALUE normalized intensity values
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60742_M430-2_CEPA0104_Stat Pairs EPA05020_60742_M430-2_CEPA0104_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 263.8 P 0.001593
AFFX-BioB-M_at 20 20 366.4 P 0.000070
AFFX-BioB-3_at 20 20 149.3 P 0.000754
AFFX-BioC-5_at 20 20 871.8 P 0.000060
AFFX-BioC-3_at 20 20 1044.5 P 0.000044
AFFX-BioDn-5_at 20 20 1507.5 P 0.000044
AFFX-BioDn-3_at 20 20 4580.6 P 0.000127
AFFX-CreX-5_at 20 20 10634.4 P 0.000052
AFFX-CreX-3_at 20 20 12050.6 P 0.000044
AFFX-DapX-5_at 20 20 17.9 A 0.485107
AFFX-DapX-M_at 20 20 35.8 A 0.227636
AFFX-DapX-3_at 20 20 16.7 A 0.814869
AFFX-LysX-5_at 20 20 1.1 A 0.981719
AFFX-LysX-M_at 20 20 4.8 A 0.937071
AFFX-LysX-3_at 20 20 28.4 P 0.013804
AFFX-PheX-5_at 20 20 1.5 A 0.992380
AFFX-PheX-M_at 20 20 2.1 A 0.876428
AFFX-PheX-3_at 20 20 32.4 A 0.368438
AFFX-ThrX-5_at 20 20 7.1 A 0.699394
AFFX-ThrX-M_at 20 20 5.3 A 0.659339

Total number of rows: 45101

Table truncated, full table size 1493 Kbytes.




Supplementary file Size Download File type/resource
GSM139689.CEL.gz 6.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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