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Sample GSM139692 Query DataSets for GSM139692
Status Public on Oct 21, 2006
Title NRMRL test replicate01, EPA5 batch032405
Sample type RNA
 
Source name murine small intestinal cell culture
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 11, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60745_M430-2_CEPA0501_Stat Pairs total probe sets
EPA05020_60745_M430-2_CEPA0501_Stat Pairs Used probe sets used
VALUE normalized intensity values
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60745_M430-2_CEPA0501_Stat Pairs EPA05020_60745_M430-2_CEPA0501_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 227.0 P 0.001102
AFFX-BioB-M_at 20 20 385.9 P 0.000060
AFFX-BioB-3_at 20 20 184.0 P 0.000070
AFFX-BioC-5_at 20 20 892.8 P 0.000052
AFFX-BioC-3_at 20 20 1059.7 P 0.000044
AFFX-BioDn-5_at 20 20 1535.4 P 0.000044
AFFX-BioDn-3_at 20 20 4289.9 P 0.000095
AFFX-CreX-5_at 20 20 9377.8 P 0.000052
AFFX-CreX-3_at 20 20 10892.4 P 0.000044
AFFX-DapX-5_at 20 20 24.1 A 0.354453
AFFX-DapX-M_at 20 20 25.7 A 0.368438
AFFX-DapX-3_at 20 20 8.2 A 0.737173
AFFX-LysX-5_at 20 20 0.9 A 0.981719
AFFX-LysX-M_at 20 20 7.8 A 0.737173
AFFX-LysX-3_at 20 20 19.6 A 0.147939
AFFX-PheX-5_at 20 20 2.2 A 0.966323
AFFX-PheX-M_at 20 20 3.1 A 0.960339
AFFX-PheX-3_at 20 20 12.8 A 0.514891
AFFX-ThrX-5_at 20 20 22.9 A 0.617401
AFFX-ThrX-M_at 20 20 6.4 A 0.631562

Total number of rows: 45101

Table truncated, full table size 1491 Kbytes.




Supplementary file Size Download File type/resource
GSM139692.CEL.gz 6.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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