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Sample GSM139695 Query DataSets for GSM139695
Status Public on Oct 21, 2006
Title NRMRL test replicate04, EPA5 batch032405
Sample type RNA
 
Source name murine small intestinal cell culture
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 11, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60748_M430-2_CEPA0505_Stat Pairs total probe sets
EPA05020_60748_M430-2_CEPA0505_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60748_M430-2_CEPA0505_Stat Pairs EPA05020_60748_M430-2_CEPA0505_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 203.5 P 0.001102
AFFX-BioB-M_at 20 20 347.6 P 0.000052
AFFX-BioB-3_at 20 20 178.3 P 0.000258
AFFX-BioC-5_at 20 20 808.7 P 0.000044
AFFX-BioC-3_at 20 20 1101.3 P 0.000044
AFFX-BioDn-5_at 20 20 1317.2 P 0.000044
AFFX-BioDn-3_at 20 20 4335.4 P 0.000169
AFFX-CreX-5_at 20 20 8430.8 P 0.000052
AFFX-CreX-3_at 20 20 10770.2 P 0.000044
AFFX-DapX-5_at 20 20 26.4 A 0.300606
AFFX-DapX-M_at 20 20 34.8 A 0.205712
AFFX-DapX-3_at 20 20 44.6 A 0.425962
AFFX-LysX-5_at 20 20 2.3 A 0.949771
AFFX-LysX-M_at 20 20 8.3 A 0.860518
AFFX-LysX-3_at 20 20 25.1 A 0.227636
AFFX-PheX-5_at 20 20 1.9 A 0.988616
AFFX-PheX-M_at 20 20 5.5 A 0.724854
AFFX-PheX-3_at 20 20 12.7 A 0.617401
AFFX-ThrX-5_at 20 20 1.9 A 0.904352
AFFX-ThrX-M_at 20 20 1.2 A 0.945787

Total number of rows: 45101

Table truncated, full table size 1494 Kbytes.




Supplementary file Size Download File type/resource
GSM139695.CEL.gz 6.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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