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Sample GSM139696 Query DataSets for GSM139696
Status Public on Oct 21, 2006
Title NRMRL test replicate05, EPA5 batch032405
Sample type RNA
 
Source name murine small intestinal tissue
Organism Mus musculus
Characteristics MICcl2
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 11, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60749_M430-2_CEPA0507_Stat Pairs total probe sets
EPA05020_60749_M430-2_CEPA0507_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60749_M430-2_CEPA0507_Stat Pairs EPA05020_60749_M430-2_CEPA0507_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 210.9 P 0.000972
AFFX-BioB-M_at 20 20 314.1 P 0.000147
AFFX-BioB-3_at 20 20 178.7 P 0.000581
AFFX-BioC-5_at 20 20 722.3 P 0.000060
AFFX-BioC-3_at 20 20 993.9 P 0.000044
AFFX-BioDn-5_at 20 20 1136.2 P 0.000044
AFFX-BioDn-3_at 20 20 3946.0 P 0.000081
AFFX-CreX-5_at 20 20 7996.8 P 0.000052
AFFX-CreX-3_at 20 20 10599.8 P 0.000044
AFFX-DapX-5_at 20 20 6.2 A 0.631562
AFFX-DapX-M_at 20 20 24.1 A 0.470241
AFFX-DapX-3_at 20 20 7.1 A 0.897855
AFFX-LysX-5_at 20 20 4.1 A 0.382599
AFFX-LysX-M_at 20 20 3.5 A 0.966323
AFFX-LysX-3_at 20 20 23.2 A 0.262827
AFFX-PheX-5_at 20 20 1.7 A 0.976071
AFFX-PheX-M_at 20 20 3.4 A 0.876428
AFFX-PheX-3_at 20 20 16.7 A 0.529760
AFFX-ThrX-5_at 20 20 26.1 A 0.340661
AFFX-ThrX-M_at 20 20 3.8 A 0.712257

Total number of rows: 45101

Table truncated, full table size 1491 Kbytes.




Supplementary file Size Download File type/resource
GSM139696.CEL.gz 6.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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