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Sample GSM139698 Query DataSets for GSM139698
Status Public on Oct 21, 2006
Title NRMRL test replicate02, EPA9, batch032405
Sample type RNA
 
Source name murine small intestinal cell culture
Organism Mus musculus
Characteristics MICcl2
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 11, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60751_M430-2_CEPA0902_Stat Pairs total probe sets
EPA05020_60751_M430-2_CEPA0902_Stat Pairs Used probe sets used
VALUE normalized intensity values
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60751_M430-2_CEPA0902_Stat Pairs EPA05020_60751_M430-2_CEPA0902_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 184.7 P 0.002023
AFFX-BioB-M_at 20 20 337.6 P 0.000258
AFFX-BioB-3_at 20 20 193.7 P 0.015183
AFFX-BioC-5_at 20 20 879.8 P 0.000044
AFFX-BioC-3_at 20 20 1234.6 P 0.000044
AFFX-BioDn-5_at 20 20 1223.4 P 0.000044
AFFX-BioDn-3_at 20 20 5344.4 P 0.000297
AFFX-CreX-5_at 20 20 10062.1 P 0.000052
AFFX-CreX-3_at 20 20 12558.7 P 0.000044
AFFX-DapX-5_at 20 20 3.4 A 0.852082
AFFX-DapX-M_at 20 20 76.7 A 0.123572
AFFX-DapX-3_at 20 20 43.5 A 0.645547
AFFX-LysX-5_at 20 20 3.7 A 0.945802
AFFX-LysX-M_at 20 20 9.2 A 0.897835
AFFX-LysX-3_at 20 20 15.7 A 0.262809
AFFX-PheX-5_at 20 20 2.4 A 0.984817
AFFX-PheX-M_at 20 20 4.9 A 0.953519
AFFX-PheX-3_at 20 20 15.9 A 0.699394
AFFX-ThrX-5_at 20 20 5.8 A 0.699410
AFFX-ThrX-M_at 20 20 20.4 A 0.396920

Total number of rows: 45101

Table truncated, full table size 1497 Kbytes.




Supplementary file Size Download File type/resource
GSM139698.CEL.gz 6.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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