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Sample GSM139699 Query DataSets for GSM139699
Status Public on Oct 21, 2006
Title NRMRL test replicate03, EPA9 batch032405
Sample type RNA
 
Source name murine small intestinal cell culture
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 11, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60752_M430-2_CEPA0903@N2_Stat Pairs total probe sets
EPA05020_60752_M430-2_CEPA0903@N2_Stat Pairs Used probe sets used
VALUE normalized intensity values
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60752_M430-2_CEPA0903@N2_Stat Pairs EPA05020_60752_M430-2_CEPA0903@N2_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 375.5 P 0.001102
AFFX-BioB-M_at 20 20 564.9 P 0.000169
AFFX-BioB-3_at 20 20 264.9 P 0.000297
AFFX-BioC-5_at 20 20 1121.4 P 0.000060
AFFX-BioC-3_at 20 20 1390.8 P 0.000044
AFFX-BioDn-5_at 20 20 1783.5 P 0.000044
AFFX-BioDn-3_at 20 20 5794.4 P 0.000070
AFFX-CreX-5_at 20 20 13918.2 P 0.000052
AFFX-CreX-3_at 20 20 14898.9 P 0.000044
AFFX-DapX-5_at 20 20 4.4 A 0.544588
AFFX-DapX-M_at 20 20 27.5 A 0.354441
AFFX-DapX-3_at 20 20 34.0 A 0.262827
AFFX-LysX-5_at 20 20 1.7 A 0.941572
AFFX-LysX-M_at 20 20 8.7 A 0.824672
AFFX-LysX-3_at 20 20 24.5 A 0.382599
AFFX-PheX-5_at 20 20 3.5 A 0.971554
AFFX-PheX-M_at 20 20 1.6 A 0.945787
AFFX-PheX-3_at 20 20 14.1 A 0.500000
AFFX-ThrX-5_at 20 20 5.0 A 0.916408
AFFX-ThrX-M_at 20 20 39.0 A 0.139462

Total number of rows: 45101

Table truncated, full table size 1490 Kbytes.




Supplementary file Size Download File type/resource
GSM139699.CEL.gz 6.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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