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Sample GSM139702 Query DataSets for GSM139702
Status Public on Oct 21, 2006
Title NRMRL test replicate01, EPA61 batch032405
Sample type RNA
 
Source name murine small intestinal cell culture
Organism Mus musculus
Characteristics MICcl2
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 11, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60755_M430-2_CEPA6101_Stat Pairs total probe sets
EPA05020_60755_M430-2_CEPA6101_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60755_M430-2_CEPA6101_Stat Pairs EPA05020_60755_M430-2_CEPA6101_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 286.3 P 0.001248
AFFX-BioB-M_at 20 20 450.7 P 0.000110
AFFX-BioB-3_at 20 20 257.9 P 0.000297
AFFX-BioC-5_at 20 20 1168.8 P 0.000060
AFFX-BioC-3_at 20 20 1230.2 P 0.000044
AFFX-BioDn-5_at 20 20 1944.6 P 0.000044
AFFX-BioDn-3_at 20 20 5694.9 P 0.000110
AFFX-CreX-5_at 20 20 12278.5 P 0.000052
AFFX-CreX-3_at 20 20 14492.7 P 0.000044
AFFX-DapX-5_at 20 20 10.8 A 0.544588
AFFX-DapX-M_at 20 20 31.0 A 0.313723
AFFX-DapX-3_at 20 20 6.1 A 0.945787
AFFX-LysX-5_at 20 20 10.8 A 0.686277
AFFX-LysX-M_at 20 20 6.4 A 0.957038
AFFX-LysX-3_at 20 20 2.6 A 0.834160
AFFX-PheX-5_at 20 20 1.6 A 0.991560
AFFX-PheX-M_at 20 20 3.9 A 0.588620
AFFX-PheX-3_at 20 20 45.7 A 0.425962
AFFX-ThrX-5_at 20 20 6.5 A 0.724854
AFFX-ThrX-M_at 20 20 23.3 A 0.313723

Total number of rows: 45101

Table truncated, full table size 1493 Kbytes.




Supplementary file Size Download File type/resource
GSM139702.CEL.gz 6.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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