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Sample GSM139709 Query DataSets for GSM139709
Status Public on Oct 21, 2006
Title NRMRL test replicate05, EPA61 batch032405
Sample type RNA
 
Source name murine small intestinal cell culture
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 11, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60759_M430-2_CEPA6106_Stat Pairs total probe sets
EPA05020_60759_M430-2_CEPA6106_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60759_M430-2_CEPA6106_Stat Pairs EPA05020_60759_M430-2_CEPA6106_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 301.8 P 0.000754
AFFX-BioB-M_at 20 20 576.8 P 0.000110
AFFX-BioB-3_at 20 20 230.7 P 0.000754
AFFX-BioC-5_at 20 20 1153.6 P 0.000052
AFFX-BioC-3_at 20 20 1583.5 P 0.000044
AFFX-BioDn-5_at 20 20 1693.8 P 0.000044
AFFX-BioDn-3_at 20 20 6524.2 P 0.000095
AFFX-CreX-5_at 20 20 11789.5 P 0.000052
AFFX-CreX-3_at 20 20 14813.5 P 0.000044
AFFX-DapX-5_at 20 20 31.7 A 0.175328
AFFX-DapX-M_at 20 20 34.4 A 0.227636
AFFX-DapX-3_at 20 20 17.9 A 0.645559
AFFX-LysX-5_at 20 20 8.5 A 0.699394
AFFX-LysX-M_at 20 20 22.9 A 0.659352
AFFX-LysX-3_at 20 20 23.7 A 0.287743
AFFX-PheX-5_at 20 20 5.0 A 0.941556
AFFX-PheX-M_at 20 20 3.3 A 0.963444
AFFX-PheX-3_at 20 20 45.8 A 0.631562
AFFX-ThrX-5_at 20 20 6.8 A 0.737173
AFFX-ThrX-M_at 20 20 23.8 A 0.440646

Total number of rows: 45101

Table truncated, full table size 1494 Kbytes.




Supplementary file Size Download File type/resource
GSM139709.CEL.gz 6.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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