NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM139768 Query DataSets for GSM139768
Status Public on Oct 21, 2006
Title NRMRL test replicate04, EPA63 batch032405
Sample type RNA
 
Source name murine small intestinal cell culture, 5 hour infection
Organism Mus musculus
Characteristics MICcl2
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 12, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60763_M430-2_CEPA6306_Stat Pairs total probe sets
EPA05020_60763_M430-2_CEPA6306_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60763_M430-2_CEPA6306_Stat Pairs EPA05020_60763_M430-2_CEPA6306_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 289.4 P 0.001248
AFFX-BioB-M_at 20 20 577.1 P 0.000081
AFFX-BioB-3_at 20 20 323.7 P 0.000509
AFFX-BioC-5_at 20 20 1312.6 P 0.000044
AFFX-BioC-3_at 20 20 1718.3 P 0.000044
AFFX-BioDn-5_at 20 20 2023.5 P 0.000044
AFFX-BioDn-3_at 20 20 6594.4 P 0.000081
AFFX-CreX-5_at 20 20 12488.6 P 0.000052
AFFX-CreX-3_at 20 20 15343.4 P 0.000044
AFFX-DapX-5_at 20 20 23.6 A 0.165861
AFFX-DapX-M_at 20 20 47.2 A 0.216504
AFFX-DapX-3_at 20 20 9.1 A 0.824693
AFFX-LysX-5_at 20 20 1.4 A 0.978098
AFFX-LysX-M_at 20 20 11.1 A 0.783476
AFFX-LysX-3_at 20 20 42.7 P 0.042962
AFFX-PheX-5_at 20 20 4.1 A 0.971543
AFFX-PheX-M_at 20 20 2.5 A 0.971543
AFFX-PheX-3_at 20 20 18.2 A 0.514890
AFFX-ThrX-5_at 20 20 24.8 A 0.603081
AFFX-ThrX-M_at 20 20 23.2 A 0.425962

Total number of rows: 45101

Table truncated, full table size 1495 Kbytes.




Supplementary file Size Download File type/resource
GSM139768.CEL.gz 6.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap