NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM139771 Query DataSets for GSM139771
Status Public on Oct 21, 2006
Title NRMRL test replicate02, EPA71 batch032405
Sample type RNA
 
Source name murine small intestinal cell culture, 5 hour infection
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 12, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60766_M430-2_CEPA7104_Stat Pairs total probe sets
EPA05020_60766_M430-2_CEPA7104_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60766_M430-2_CEPA7104_Stat Pairs EPA05020_60766_M430-2_CEPA7104_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 442.8 P 0.000754
AFFX-BioB-M_at 20 20 759.3 P 0.000070
AFFX-BioB-3_at 20 20 417.1 P 0.000095
AFFX-BioC-5_at 20 20 1605.1 P 0.000060
AFFX-BioC-3_at 20 20 1937.8 P 0.000044
AFFX-BioDn-5_at 20 20 3159.7 P 0.000044
AFFX-BioDn-3_at 20 20 8175.7 P 0.000095
AFFX-CreX-5_at 20 20 19467.6 P 0.000052
AFFX-CreX-3_at 20 20 21823.6 P 0.000044
AFFX-DapX-5_at 20 20 9.8 A 0.631562
AFFX-DapX-M_at 20 20 41.0 A 0.147939
AFFX-DapX-3_at 20 20 35.8 A 0.603081
AFFX-LysX-5_at 20 20 26.1 A 0.227636
AFFX-LysX-M_at 20 20 7.7 A 0.891021
AFFX-LysX-3_at 20 20 45.8 M 0.050229
AFFX-PheX-5_at 20 20 2.4 A 0.976071
AFFX-PheX-M_at 20 20 15.7 A 0.631562
AFFX-PheX-3_at 20 20 18.7 A 0.588620
AFFX-ThrX-5_at 20 20 10.6 A 0.699394
AFFX-ThrX-M_at 20 20 3.0 A 0.794268

Total number of rows: 45101

Table truncated, full table size 1494 Kbytes.




Supplementary file Size Download File type/resource
GSM139771.CEL.gz 6.2 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap