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Sample GSM139772 Query DataSets for GSM139772
Status Public on Oct 21, 2006
Title NRMRL test replicate03, EPA71 batch032405
Sample type RNA
 
Source name murine small intestinal cell culture, 5 hour infection
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 12, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60767_M430-2_CEPA7105_Stat Pairs total probe sets
EPA05020_60767_M430-2_CEPA7105_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60767_M430-2_CEPA7105_Stat Pairs EPA05020_60767_M430-2_CEPA7105_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 354.1 P 0.000754
AFFX-BioB-M_at 20 20 588.8 P 0.000340
AFFX-BioB-3_at 20 20 318.8 P 0.000509
AFFX-BioC-5_at 20 20 1425.7 P 0.000070
AFFX-BioC-3_at 20 20 1872.4 P 0.000044
AFFX-BioDn-5_at 20 20 1943.6 P 0.000044
AFFX-BioDn-3_at 20 20 7736.3 P 0.000225
AFFX-CreX-5_at 20 20 17113.8 P 0.000052
AFFX-CreX-3_at 20 20 22067.1 P 0.000044
AFFX-DapX-5_at 20 20 53.5 A 0.147939
AFFX-DapX-M_at 20 20 55.1 A 0.216524
AFFX-DapX-3_at 20 20 12.9 A 0.876428
AFFX-LysX-5_at 20 20 7.2 A 0.783476
AFFX-LysX-M_at 20 20 14.7 A 0.809864
AFFX-LysX-3_at 20 20 60.2 P 0.036569
AFFX-PheX-5_at 20 20 12.3 A 0.794268
AFFX-PheX-M_at 20 20 12.3 A 0.760937
AFFX-PheX-3_at 20 20 21.9 A 0.699394
AFFX-ThrX-5_at 20 20 38.5 A 0.411380
AFFX-ThrX-M_at 20 20 32.1 A 0.411380

Total number of rows: 45101

Table truncated, full table size 1497 Kbytes.




Supplementary file Size Download File type/resource
GSM139772.CEL.gz 5.9 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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