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Sample GSM139778 Query DataSets for GSM139778
Status Public on Oct 21, 2006
Title NRMRL control replicate04, uninfected batch051905
Sample type RNA
 
Source name neonatal mouse small intestinal tissue
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 12, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60827_M430-2_EPA0104N_Stat Pairs total probe sets
EPA05020_60827_M430-2_EPA0104N_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60827_M430-2_EPA0104N_Stat Pairs EPA05020_60827_M430-2_EPA0104N_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 219.7 P 0.002023
AFFX-BioB-M_at 20 20 305.5 P 0.000340
AFFX-BioB-3_at 20 20 195.2 P 0.001796
AFFX-BioC-5_at 20 20 691.1 P 0.000060
AFFX-BioC-3_at 20 20 861.3 P 0.000060
AFFX-BioDn-5_at 20 20 1180.6 P 0.000052
AFFX-BioDn-3_at 20 20 3214.7 P 0.000169
AFFX-CreX-5_at 20 20 9492.9 P 0.000052
AFFX-CreX-3_at 20 20 10430.4 P 0.000044
AFFX-DapX-5_at 20 20 15.7 A 0.313723
AFFX-DapX-M_at 20 20 17.9 A 0.354453
AFFX-DapX-3_at 20 20 12.7 A 0.699410
AFFX-LysX-5_at 20 20 2.0 A 0.904333
AFFX-LysX-M_at 20 20 2.3 A 0.960352
AFFX-LysX-3_at 20 20 35.4 A 0.131361
AFFX-PheX-5_at 20 20 1.1 A 0.960339
AFFX-PheX-M_at 20 20 1.9 A 0.960339
AFFX-PheX-3_at 20 20 12.0 A 0.686277
AFFX-ThrX-5_at 20 20 3.7 A 0.860518
AFFX-ThrX-M_at 20 20 2.5 A 0.794268

Total number of rows: 45101

Table truncated, full table size 1500 Kbytes.




Supplementary file Size Download File type/resource
GSM139778.CEL.gz 6.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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