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Sample GSM139786 Query DataSets for GSM139786
Status Public on Oct 21, 2006
Title NRMRL test replicate02, EPA5 batch051905
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 12, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60839_M430-2_EPA0303N_Stat Pairs total probe sets
EPA05020_60839_M430-2_EPA0303N_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60839_M430-2_EPA0303N_Stat Pairs EPA05020_60839_M430-2_EPA0303N_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 245.5 P 0.005565
AFFX-BioB-M_at 20 20 335.6 P 0.001593
AFFX-BioB-3_at 20 20 145.2 P 0.009337
AFFX-BioC-5_at 20 20 778.2 P 0.000081
AFFX-BioC-3_at 20 20 756.3 P 0.000081
AFFX-BioDn-5_at 20 20 1075.3 P 0.000044
AFFX-BioDn-3_at 20 20 3834.5 P 0.000297
AFFX-CreX-5_at 20 20 12920.8 P 0.000052
AFFX-CreX-3_at 20 20 13365.4 P 0.000044
AFFX-DapX-5_at 20 20 16.6 A 0.327080
AFFX-DapX-M_at 20 20 36.0 A 0.123572
AFFX-DapX-3_at 20 20 7.1 A 0.927300
AFFX-LysX-5_at 20 20 1.3 A 0.995516
AFFX-LysX-M_at 20 20 8.8 A 0.749204
AFFX-LysX-3_at 20 20 19.4 A 0.205732
AFFX-PheX-5_at 20 20 3.1 A 0.960339
AFFX-PheX-M_at 20 20 6.4 A 0.834139
AFFX-PheX-3_at 20 20 15.6 A 0.672921
AFFX-ThrX-5_at 20 20 9.7 A 0.834139
AFFX-ThrX-M_at 20 20 25.1 A 0.425962

Total number of rows: 45101

Table truncated, full table size 1501 Kbytes.




Supplementary file Size Download File type/resource
GSM139786.CEL.gz 6.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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