NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM139792 Query DataSets for GSM139792
Status Public on Oct 21, 2006
Title NRMRL test replicate02, EPA9 batch051905
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 12, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60844_M430-2_EPA0405N_Stat Pairs total probe sets
EPA05020_60844_M430-2_EPA0405N_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60844_M430-2_EPA0405N_Stat Pairs EPA05020_60844_M430-2_EPA0405N_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 262.1 P 0.001102
AFFX-BioB-M_at 20 20 374.7 P 0.000662
AFFX-BioB-3_at 20 20 187.2 P 0.003592
AFFX-BioC-5_at 20 20 775.8 P 0.000052
AFFX-BioC-3_at 20 20 1073.8 P 0.000044
AFFX-BioDn-5_at 20 20 1229.5 P 0.000044
AFFX-BioDn-3_at 20 20 3983.9 P 0.000169
AFFX-CreX-5_at 20 20 10508.4 P 0.000052
AFFX-CreX-3_at 20 20 12716.1 P 0.000044
AFFX-DapX-5_at 20 20 17.2 A 0.396920
AFFX-DapX-M_at 20 20 35.0 A 0.131361
AFFX-DapX-3_at 20 20 37.6 A 0.440646
AFFX-LysX-5_at 20 20 2.1 A 0.617401
AFFX-LysX-M_at 20 20 5.5 A 0.891021
AFFX-LysX-3_at 20 20 35.0 M 0.054213
AFFX-PheX-5_at 20 20 4.4 A 0.927318
AFFX-PheX-M_at 20 20 2.1 A 0.960339
AFFX-PheX-3_at 20 20 10.5 A 0.631562
AFFX-ThrX-5_at 20 20 34.1 A 0.340661
AFFX-ThrX-M_at 20 20 1.3 A 0.904333

Total number of rows: 45101

Table truncated, full table size 1498 Kbytes.




Supplementary file Size Download File type/resource
GSM139792.CEL.gz 6.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap