NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM139793 Query DataSets for GSM139793
Status Public on Oct 21, 2006
Title NRMRL test replicate03, EPA9 batch051905
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 12, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60845_M430-2_EPA0406N_Stat Pairs total probe sets
EPA05020_60845_M430-2_EPA0406N_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60845_M430-2_EPA0406N_Stat Pairs EPA05020_60845_M430-2_EPA0406N_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 241.9 P 0.001593
AFFX-BioB-M_at 20 20 443.5 P 0.000662
AFFX-BioB-3_at 20 20 190.7 P 0.000390
AFFX-BioC-5_at 20 20 832.5 P 0.000081
AFFX-BioC-3_at 20 20 1062.6 P 0.000044
AFFX-BioDn-5_at 20 20 1367.7 P 0.000044
AFFX-BioDn-3_at 20 20 4112.7 P 0.000195
AFFX-CreX-5_at 20 20 11272.4 P 0.000052
AFFX-CreX-3_at 20 20 13727.5 P 0.000044
AFFX-DapX-5_at 20 20 23.6 A 0.262827
AFFX-DapX-M_at 20 20 8.1 A 0.699394
AFFX-DapX-3_at 20 20 41.6 A 0.440646
AFFX-LysX-5_at 20 20 1.8 A 0.843290
AFFX-LysX-M_at 20 20 5.2 A 0.891021
AFFX-LysX-3_at 20 20 12.0 A 0.440646
AFFX-PheX-5_at 20 20 1.5 A 0.973899
AFFX-PheX-M_at 20 20 3.3 A 0.852061
AFFX-PheX-3_at 20 20 17.2 A 0.559354
AFFX-ThrX-5_at 20 20 33.7 A 0.529760
AFFX-ThrX-M_at 20 20 3.4 A 0.814869

Total number of rows: 45101

Table truncated, full table size 1498 Kbytes.




Supplementary file Size Download File type/resource
GSM139793.CEL.gz 6.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap