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Sample GSM139828 Query DataSets for GSM139828
Status Public on Oct 21, 2006
Title NRMRL test replicate05, EPA61 batch051905
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 12, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60862_M430-2_EPA0707N_Stat Pairs total probe sets
EPA05020_60862_M430-2_EPA0707N_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60862_M430-2_EPA0707N_Stat Pairs EPA05020_60862_M430-2_EPA0707N_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 190.2 P 0.003595
AFFX-BioB-M_at 20 20 280.4 P 0.001796
AFFX-BioB-3_at 20 20 141.0 P 0.004017
AFFX-BioC-5_at 20 20 673.9 P 0.000060
AFFX-BioC-3_at 20 20 824.4 P 0.000052
AFFX-BioDn-5_at 20 20 917.1 P 0.000044
AFFX-BioDn-3_at 20 20 3068.4 P 0.000225
AFFX-CreX-5_at 20 20 9070.3 P 0.000052
AFFX-CreX-3_at 20 20 10947.8 P 0.000044
AFFX-DapX-5_at 20 20 14.3 A 0.470238
AFFX-DapX-M_at 20 20 3.5 A 0.794268
AFFX-DapX-3_at 20 20 10.7 A 0.814869
AFFX-LysX-5_at 20 20 1.8 A 0.916408
AFFX-LysX-M_at 20 20 11.0 A 0.686277
AFFX-LysX-3_at 20 20 13.8 A 0.262827
AFFX-PheX-5_at 20 20 1.5 A 0.937071
AFFX-PheX-M_at 20 20 5.7 A 0.672921
AFFX-PheX-3_at 20 20 11.8 A 0.772364
AFFX-ThrX-5_at 20 20 1.9 A 0.945802
AFFX-ThrX-M_at 20 20 7.2 A 0.559354

Total number of rows: 45101

Table truncated, full table size 1499 Kbytes.




Supplementary file Size Download File type/resource
GSM139828.CEL.gz 6.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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