NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM139856 Query DataSets for GSM139856
Status Public on Oct 21, 2006
Title NRMRL test replicate04, EPA52 batch093005
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster noenate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 12, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05022_61229_M430-2_5293007_Stat Pairs total probe sets
EPA05022_61229_M430-2_5293007_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05022_61229_M430-2_5293007_Stat Pairs EPA05022_61229_M430-2_5293007_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 286.8 P 0.009337
AFFX-BioB-M_at 20 20 355.8 P 0.000857
AFFX-BioB-3_at 20 20 215.1 P 0.002556
AFFX-BioC-5_at 20 20 659.5 P 0.000110
AFFX-BioC-3_at 20 20 784.0 P 0.000127
AFFX-BioDn-5_at 20 20 1324.9 P 0.000070
AFFX-BioDn-3_at 20 20 4605.9 P 0.000509
AFFX-CreX-5_at 20 20 12085.1 P 0.000052
AFFX-CreX-3_at 20 20 15035.1 P 0.000044
AFFX-DapX-5_at 20 20 42.8 A 0.216524
AFFX-DapX-M_at 20 20 51.9 A 0.185131
AFFX-DapX-3_at 20 20 50.1 A 0.529760
AFFX-LysX-5_at 20 20 2.0 A 0.986190
AFFX-LysX-M_at 20 20 10.3 A 0.843269
AFFX-LysX-3_at 20 20 16.7 A 0.275111
AFFX-PheX-5_at 20 20 4.5 A 0.966323
AFFX-PheX-M_at 20 20 17.8 A 0.544588
AFFX-PheX-3_at 20 20 26.3 A 0.574038
AFFX-ThrX-5_at 20 20 23.8 A 0.574038
AFFX-ThrX-M_at 20 20 24.7 A 0.425962

Total number of rows: 45101

Table truncated, full table size 1504 Kbytes.




Supplementary file Size Download File type/resource
GSM139856.CEL.gz 6.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap