NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM139875 Query DataSets for GSM139875
Status Public on Oct 21, 2006
Title NRMRL test replicate01, EPA73 batch093005
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 day infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 12, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05022_61217_M430-2_7393001_Stat Pairs total probe sets
EPA05022_61217_M430-2_7393001_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05022_61217_M430-2_7393001_Stat Pairs EPA05022_61217_M430-2_7393001_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 213.6 P 0.005565
AFFX-BioB-M_at 20 20 284.8 P 0.002556
AFFX-BioB-3_at 20 20 178.5 P 0.039648
AFFX-BioC-5_at 20 20 540.3 P 0.000110
AFFX-BioC-3_at 20 20 733.7 P 0.000225
AFFX-BioDn-5_at 20 20 942.4 P 0.000070
AFFX-BioDn-3_at 20 20 3971.1 P 0.000446
AFFX-CreX-5_at 20 20 8164.2 P 0.000052
AFFX-CreX-3_at 20 20 11086.3 P 0.000044
AFFX-DapX-5_at 20 20 55.4 A 0.156732
AFFX-DapX-M_at 20 20 44.6 A 0.354453
AFFX-DapX-3_at 20 20 50.9 A 0.455413
AFFX-LysX-5_at 20 20 1.3 A 0.927300
AFFX-LysX-M_at 20 20 7.3 A 0.883908
AFFX-LysX-3_at 20 20 26.2 A 0.108979
AFFX-PheX-5_at 20 20 9.3 A 0.794268
AFFX-PheX-M_at 20 20 1.0 A 0.991560
AFFX-PheX-3_at 20 20 19.5 A 0.724854
AFFX-ThrX-5_at 20 20 6.3 A 0.724854
AFFX-ThrX-M_at 20 20 28.5 A 0.425962

Total number of rows: 45101

Table truncated, full table size 1504 Kbytes.




Supplementary file Size Download File type/resource
GSM139875.CEL.gz 6.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap