NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM139934 Query DataSets for GSM139934
Status Public on Oct 21, 2006
Title NRMRL test replicate01, EPA80 batch093005
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 13, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05022_61237_M430-2_8093001_Stat Pairs total probe sets
EPA05022_61237_M430-2_8093001_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05022_61237_M430-2_8093001_Stat Pairs EPA05022_61237_M430-2_8093001_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 266.5 P 0.009337
AFFX-BioB-M_at 20 20 286.1 P 0.000972
AFFX-BioB-3_at 20 20 196.9 P 0.015183
AFFX-BioC-5_at 20 20 618.5 P 0.000169
AFFX-BioC-3_at 20 20 611.4 P 0.000147
AFFX-BioDn-5_at 20 20 1052.4 P 0.000070
AFFX-BioDn-3_at 20 20 3516.0 P 0.000662
AFFX-CreX-5_at 20 20 8669.0 P 0.000052
AFFX-CreX-3_at 20 20 10363.3 P 0.000044
AFFX-DapX-5_at 20 20 36.8 A 0.139483
AFFX-DapX-M_at 20 20 34.8 A 0.300606
AFFX-DapX-3_at 20 20 39.3 A 0.529760
AFFX-LysX-5_at 20 20 6.4 A 0.699394
AFFX-LysX-M_at 20 20 9.0 A 0.860518
AFFX-LysX-3_at 20 20 34.9 A 0.239063
AFFX-PheX-5_at 20 20 3.1 A 0.916408
AFFX-PheX-M_at 20 20 6.3 A 0.724854
AFFX-PheX-3_at 20 20 56.3 A 0.500000
AFFX-ThrX-5_at 20 20 8.0 A 0.749204
AFFX-ThrX-M_at 20 20 20.8 A 0.559354

Total number of rows: 45101

Table truncated, full table size 1505 Kbytes.




Supplementary file Size Download File type/resource
GSM139934.CEL.gz 6.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap