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Sample GSM139935 Query DataSets for GSM139935
Status Public on Oct 21, 2006
Title NRMRL test replicate02, EPA80 batch093005
Sample type RNA
 
Source name noenatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 13, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05022_61238_M430-2_8093002_Stat Pairs total probe sets
EPA05022_61238_M430-2_8093002_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05022_61238_M430-2_8093002_Stat Pairs EPA05022_61238_M430-2_8093002_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 298.3 P 0.006871
AFFX-BioB-M_at 20 20 385.2 P 0.000581
AFFX-BioB-3_at 20 20 233.3 P 0.000754
AFFX-BioC-5_at 20 20 778.9 P 0.000147
AFFX-BioC-3_at 20 20 890.2 P 0.000095
AFFX-BioDn-5_at 20 20 1439.2 P 0.000070
AFFX-BioDn-3_at 20 20 4203.2 P 0.000446
AFFX-CreX-5_at 20 20 11038.7 P 0.000052
AFFX-CreX-3_at 20 20 14022.6 P 0.000044
AFFX-DapX-5_at 20 20 29.4 A 0.514890
AFFX-DapX-M_at 20 20 60.4 A 0.227636
AFFX-DapX-3_at 20 20 43.4 A 0.672921
AFFX-LysX-5_at 20 20 1.7 A 0.978098
AFFX-LysX-M_at 20 20 9.8 A 0.897835
AFFX-LysX-3_at 20 20 23.5 A 0.216524
AFFX-PheX-5_at 20 20 2.6 A 0.973889
AFFX-PheX-M_at 20 20 3.2 A 0.916408
AFFX-PheX-3_at 20 20 22.0 A 0.699394
AFFX-ThrX-5_at 20 20 14.8 A 0.843269
AFFX-ThrX-M_at 20 20 26.0 A 0.544588

Total number of rows: 45101

Table truncated, full table size 1504 Kbytes.




Supplementary file Size Download File type/resource
GSM139935.CEL.gz 6.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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